Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0085
         (363 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   0.55 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   0.55 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   0.55 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   0.55 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   1.7  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   2.2  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   2.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   2.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   6.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   6.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   6.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    20   6.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   6.8  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    20   6.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   6.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 165 NVLFILNLMKGYLLRCFCQFTRPYRKHAVATL 260
           +VLFIL + +G +   F QF+  +  H +  L
Sbjct: 313 SVLFILLVKEGEVAFFFTQFSEGFSTHQIQVL 344


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 165 NVLFILNLMKGYLLRCFCQFTRPYRKHAVATL 260
           +VLFIL + +G +   F QF+  +  H +  L
Sbjct: 313 SVLFILLVKEGEVAFFFTQFSEGFSTHQIQVL 344


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 165 NVLFILNLMKGYLLRCFCQFTRPYRKHAVATL 260
           +VLFIL + +G +   F QF+  +  H +  L
Sbjct: 313 SVLFILLVKEGEVAFFFTQFSEGFSTHQIQVL 344


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 165 NVLFILNLMKGYLLRCFCQFTRPYRKHAVATL 260
           +VLFIL + +G +   F QF+  +  H +  L
Sbjct: 313 SVLFILLVKEGEVAFFFTQFSEGFSTHQIQVL 344


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 101 HVSFHLHENRRAGRLLEILPIDPLNIQPY 15
           +VS H  +N+R+G  L++  +D L  + Y
Sbjct: 23  NVSLHSLKNKRSGASLQVGILDSLVFKCY 51


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 VCAILTKMAMGSSLLRNCDTCSLLSERS 362
           +C ++  +   S ++  CD C++ S+++
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIASKQT 308


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 VCAILTKMAMGSSLLRNCDTCSLLSERS 362
           +C ++  +   S ++  CD C++ S+++
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIASKQT 308


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 173 LHLKPDERISFEVFLPIYQAISKARSGDTANDFI 274
           LHL   + +SF + LP  Q +  AR G    D I
Sbjct: 250 LHLHLTDAVSFPIVLPKVQEL--ARFGAYGPDMI 281


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 266 IWFQNRRMKWKKEHKMASMNIV 287


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 266 IWFQNRRMKWKKEHKMASMNIV 287


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 266 IWFQNRRMKWKKEHKMASMNIV 287


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 222 IWFQNRRMKWKKEHKMASMNIV 243


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 266 IWFQNRRMKWKKEHKMASMNIV 287


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 54  IWFQNRRMKWKKEHKMASMNIV 75


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 266 IWFQNRRMKWKKEHKMASMNIV 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,598
Number of Sequences: 336
Number of extensions: 1765
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)