Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   1.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   1.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   1.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.4  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   1.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   1.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   1.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.2  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   4.3  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   4.3  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   5.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   5.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   5.6  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 86  VMFFYEPICFCENNEYGCYF--FVICDCLKKSKINDA 190
           + F ++ I    ++ Y C F  FV CDC  ++ +N A
Sbjct: 276 IRFSFKEIGLLVDSTY-CLFLLFVFCDCSHQASLNIA 311


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 86  VMFFYEPICFCENNEYGCYF--FVICDCLKKSKINDA 190
           + F ++ I    ++ Y C F  FV CDC  ++ +N A
Sbjct: 276 IRFSFKEIGLLVDSTY-CLFLLFVFCDCSHQASLNIA 311


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 86  VMFFYEPICFCENNEYGCYF--FVICDCLKKSKINDA 190
           + F ++ I    ++ Y C F  FV CDC  ++ +N A
Sbjct: 276 IRFSFKEIGLLVDSTY-CLFLLFVFCDCSHQASLNIA 311


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 20  SIRQRTLFKRNVLCAMKFIIKSVMFFYEPI 109
           ++R + L K N+      +   + F+Y+PI
Sbjct: 109 NLRPKLLLKHNLFLLDNIVKPIIAFYYKPI 138


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 202 PRRRSIVYFTFFQTVTYHKE 143
           PRRR    +T FQT+   KE
Sbjct: 5   PRRRGRQTYTRFQTLELEKE 24


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 265 TGRTFFILVSLLSGSAFTV*VPRRRSIVYFTFFQTVTYHKE 143
           T  TF+  +++     F     RRR    +T +QT+   KE
Sbjct: 201 TNHTFYPWMAIADSMTFGANGLRRRGRQTYTRYQTLELEKE 241


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 202 PRRRSIVYFTFFQTVTYHKE 143
           PRRR    +T FQT+   KE
Sbjct: 156 PRRRGRQTYTRFQTLELEKE 175


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 202 PRRRSIVYFTFFQTVTYHKE 143
           PRRR    +T FQT+   KE
Sbjct: 215 PRRRGRQTYTRFQTLELEKE 234


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 305 DDCGSDAGAGP*PASGSELC 364
           D C S    GP P    ELC
Sbjct: 169 DSCDSKKKKGPTPRQQEELC 188


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 110 CFCENNEYGCY 142
           CFCEN    C+
Sbjct: 696 CFCENGNNKCF 706


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 192 AASFILLFFRQSHITKK*HPYSLFS 118
           AA F+L +    + T K H YSL S
Sbjct: 11  AAVFLLFYLFYCYKTIKQHIYSLIS 35


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 192 AASFILLFFRQSHITKK*HPYSLFS 118
           AA F+L +    + T K H YSL S
Sbjct: 11  AAVFLLFYLFYCYKTIKQHIYSLIS 35


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 4/13 (30%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 YGCYFFVICDCLK 169
           + C   ++CDC++
Sbjct: 249 FNCTLIIMCDCVR 261


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 ICDCLKKSKINDAAT 196
           +C CL   K+ND +T
Sbjct: 334 VCLCLFGGKVNDEST 348


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 ICDCLKKSKINDAAT 196
           +C CL   K+ND +T
Sbjct: 334 VCLCLFGGKVNDEST 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,065
Number of Sequences: 336
Number of extensions: 2197
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)