Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0075
         (363 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.73 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   1.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   1.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   1.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.73
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 74   ISATTNAPEVLPAVIDSDSVAVPEPAPVTSESLVAP-VEVLAVC 202
            + A     E  P  + S +V VP P   T++SLV P  E   VC
Sbjct: 1785 VEAVEEEREEAPPSVHSSTV-VPPPQHSTTQSLVDPKSEFKVVC 1827


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 113 VIDSDSVAVPEPAPVTSESLVAPVEVLA 196
           V+ S S     P P + ESL  PV V++
Sbjct: 281 VLQSPSSTSSSPEPRSPESLFKPVTVIS 308


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 283 CAVRRWWTFC 254
           C ++ WW FC
Sbjct: 55  CELKLWWEFC 64


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 265 WTFCYCWYS 239
           + FCYC+YS
Sbjct: 551 FAFCYCYYS 559



 Score = 21.8 bits (44), Expect = 2.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -3

Query: 265 WTFCYCWYSCR 233
           ++FCYC+Y+ +
Sbjct: 270 FSFCYCYYNSK 280


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  ISATTNAPEVLPAVIDSDS 130
           ISA  NAP V PA + S S
Sbjct: 187 ISALVNAPSVSPASLPSIS 205


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 125 DSVAVPEPAPVTSESLVAPV 184
           +SVA P P  V +E   +PV
Sbjct: 308 NSVATPTPTSVMTELYPSPV 327


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 119 DSDSVAVPEPAPVTSESLVAP 181
           D +    PEPAP+ S  +  P
Sbjct: 83  DPEIPVAPEPAPLASPLVQEP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,641
Number of Sequences: 336
Number of extensions: 1009
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)