Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   7.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   7.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.9  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 164 YQVQEFHPSVVRIV 123
           YQ Q+ HP+  RIV
Sbjct: 502 YQAQKGHPNFFRIV 515


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 134  LHLDETLALGRKFILQDLDET---HLFISA 214
            + +   + LG+ F+L DLD     HL ++A
Sbjct: 1537 IQVSNNVKLGQNFVLLDLDPACWYHLRVTA 1566


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 205 EQVCFIQVLKNKLSTKCKSFIQ 140
           +++C  +V  NK    CKS +Q
Sbjct: 47  QRICNGEVAVNKCEGSCKSQVQ 68


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 534 NIIRCDFGKRL 566
           NI++ DFG+R+
Sbjct: 134 NILKADFGRRI 144


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 255 WTSSAYPCT 281
           WTSS  PCT
Sbjct: 686 WTSSDNPCT 694


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 157 YPWMKRVHLGQS 168


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 YTWMKLLHLVES 170
           Y WMK +HL +S
Sbjct: 201 YPWMKRVHLGQS 212


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +2

Query: 443 PHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTF 565
           PH        VP++    EK T +K S+       R R  +
Sbjct: 102 PHGMGSPGVNVPEYPWMKEKKTTRKSSQQENGLPRRLRTAY 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,532
Number of Sequences: 336
Number of extensions: 2881
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)