Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0068
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   3.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   6.4  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 435  CDWRYYHRAVVRKVHVMTYSSQLLG 509
            CDW+Y  + V RK     Y    +G
Sbjct: 1247 CDWKYKVKCVGRKQLAQKYQLPKMG 1271


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 557 KCDYICVNQ 583
           KCDY CVN+
Sbjct: 263 KCDYTCVNK 271


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 557 KCDYICVNQ 583
           KCDY CVN+
Sbjct: 21  KCDYTCVNK 29


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 629 LINILKGMYHNFIPGVLYKQRLQTVDNAVM 718
           L+++L G+Y +++  V   QRL+T  N  +
Sbjct: 15  LLSLLLGLYPSYLQTVGKCQRLKTDKNCTI 44


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 464 CSESTCNDLFIATFGF 511
           C  S C DLF + FGF
Sbjct: 199 CLLSECVDLFNSLFGF 214


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 467 SESTCNDLFIATFGFHFKWEAVINAI 544
           SES  ND+     GF   ++  IN+I
Sbjct: 357 SESLLNDILFPVAGFISDFDCDINSI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,690
Number of Sequences: 336
Number of extensions: 3686
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)