Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0002
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 580  YNSDATTFVHCSW 542
            Y  D T ++HC W
Sbjct: 1287 YPGDCTRYLHCLW 1299


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -1

Query: 487 NQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NG 365
           NQ+  +      F +HHI         HN  +++ N   NG
Sbjct: 38  NQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNG 78


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -1

Query: 487 NQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NG 365
           NQ+  +      F +HHI         HN  +++ N   NG
Sbjct: 38  NQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNG 78


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 285 NTGLPRCSVPAFFGD 241
           NT + +C++P+F  D
Sbjct: 138 NTAVLKCNIPSFVAD 152


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -1

Query: 487 NQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NG 365
           NQ+  +      F +HHI         HN  +++ N   NG
Sbjct: 38  NQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNG 78


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -1

Query: 487 NQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLNSF*NG 365
           NQ+  +      F +HHI         HN  +++ N   NG
Sbjct: 38  NQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNG 78


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 503 GIIAPEKCKIGIMP 544
           G +AP++CK   MP
Sbjct: 471 GSVAPKECKQDFMP 484


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,712
Number of Sequences: 336
Number of extensions: 3507
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)