Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0304
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   4.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   4.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.0  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 166 SCVVARSIMFVACGQ 122
           SCVVA  I+ + CG+
Sbjct: 298 SCVVALIILILQCGR 312


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 166 SCVVARSIMFVACGQ 122
           SCVVA  I+ + CG+
Sbjct: 224 SCVVALIILILQCGR 238


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 194 PNAYRKEKKKLR 159
           PN YR  KK+LR
Sbjct: 159 PNMYRTIKKRLR 170


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 340 ILKPHFNIYGRVHKM 296
           IL P+ N YG  H M
Sbjct: 351 ILSPNRNYYGDFHNM 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,556
Number of Sequences: 336
Number of extensions: 1456
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)