Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.7  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    23   3.0  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 286 GAKVKSVCTFEGNTLKQVQKAPDG 357
           G      C FEGN +K +    DG
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG 365


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 241 DEVQAGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLE 363
           DE+   +   ++  D    K  CT EG  LK  +  PD L+
Sbjct: 30  DEILKNDRLTKNYLDCILEKGKCTPEGEELK--KDIPDALQ 68


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 359 RPSGAFWTCLRVLP 318
           R  G FW CL  +P
Sbjct: 21  RKKGRFWECLAPIP 34


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 359 RPSGAFWTCLRVLP 318
           R  G FW CL  +P
Sbjct: 21  RKKGRFWECLAPIP 34


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 141 SPAKPPTRSPRP 176
           SP  PPT SP P
Sbjct: 94  SPTTPPTPSPPP 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 231 LKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVI 85
           L+  ++  L SS     S   +  L   +VIR TP+V + S+ +  +++
Sbjct: 353 LRFGKILLLVSSTFRTISGRTIEDLFFKKVIRDTPIVAIISNMYKNQIL 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,731
Number of Sequences: 336
Number of extensions: 2726
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)