Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 318 PNSISSDDSKKTNASEIKHLGCMNTPR 238
           PN  S      +N S +  L C+NT R
Sbjct: 231 PNPASRSSCLGSNTSSMLSLNCLNTGR 257


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 318 PNSISSDDSKKTNASEIKHLGCMNTPR 238
           PN  S      +N S +  L C+NT R
Sbjct: 20  PNPASRSSCLGSNTSSMLSLNCLNTGR 46


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 318 PNSISSDDSKKTNASEIKHLGCMNTPR 238
           PN  S      +N S +  L C+NT R
Sbjct: 20  PNPASRSSCLGSNTSSMLSLNCLNTGR 46


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = +3

Query: 465 VSSNKKKYHHASFILPSITNLTIYH 539
           +  +  KY HA  ++P   +  ++H
Sbjct: 196 IEESISKYKHAELVMPLCKSCDLHH 220


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 416 VHSLTNTDDARTTSGGLI 363
           VHS+T+ DD R  S   +
Sbjct: 255 VHSITHNDDERFWSNATV 272


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 224 DPQAWRGVFMQPRC 265
           D Q WR   +QP C
Sbjct: 330 DQQPWRSYCIQPPC 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,222
Number of Sequences: 336
Number of extensions: 2564
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)