Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   9.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   9.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 586 YHRHKVYKLHALH*VISHY 642
           +H H  + +HA H V++H+
Sbjct: 322 HHHHAGHHIHAQHHVVNHH 340


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 109 HTLCRRYRLCVH 144
           H LC +Y  CVH
Sbjct: 485 HELCDKYYRCVH 496


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 149 TSYDIVQKYLKLANY 193
           T  D+++KYL  A Y
Sbjct: 442 TQADVIEKYLSKARY 456


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 520 YY*MLYFCEFLI 555
           YY +LYFC  ++
Sbjct: 329 YYNILYFCRIMV 340


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 371 VNYYKFCLMNK 403
           VNYY  CL++K
Sbjct: 40  VNYYAACLLSK 50


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 295 YSFPKTVTRKQCYRLLGNSVNVKVISELLQI 387
           +SF   +TR  C  L G  V+ + I  LL +
Sbjct: 322 WSFALLITRIVCLCLFGAKVHDESIKPLLTL 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,750
Number of Sequences: 336
Number of extensions: 2960
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)