Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c10
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.26 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.61 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.61 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.61 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.61 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.5  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 621 TVIAICWSVIPRRRPCIFFTKLGCIL 544
           +++ +C+S++    PC+FF  LG IL
Sbjct: 220 SIVFVCFSLVEDTLPCVFF--LGSIL 243


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 WNFNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNSNCLCN 253
           +N N+     G +F + H I+   L + +  H N+NSN L N
Sbjct: 37  YNQNSYIPPGGDFFGN-HHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 WNFNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNSNCLCN 253
           +N N+     G +F + H I+   L + +  H N+NSN L N
Sbjct: 37  YNQNSYIPPGGDFFGN-HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 WNFNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNSNCLCN 253
           +N N+     G +F + H I+   L + +  H N+NSN L N
Sbjct: 37  YNQNSYIPPGGDFFGN-HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 378 WNFNNLRYRNGVWFSDVHWIRHPFLYFHWIRHWNFNSNCLCN 253
           +N N+     G +F + H I+   L + +  H N+NSN L N
Sbjct: 37  YNQNSYIPPGGDFFGN-HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 487 QSYRPTSNI 513
           QSYRPT NI
Sbjct: 246 QSYRPTGNI 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,004
Number of Sequences: 336
Number of extensions: 4107
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)