Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a12
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   154   5e-40
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   154   5e-40
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   130   7e-33
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   128   4e-32
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   2.8  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   2.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.5  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684



 Score =  151 bits (367), Expect = 3e-39
 Identities = 74/76 (97%), Positives = 74/76 (97%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 216 IQKESTLHLVLRLRGG 263
           IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  130 bits (314), Expect = 7e-33
 Identities = 63/64 (98%), Positives = 63/64 (98%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 216 IQKE 227
           IQKE
Sbjct: 61  IQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  128 bits (308), Expect = 4e-32
 Identities = 62/64 (96%), Positives = 62/64 (96%)
 Frame = +3

Query: 36  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 215
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLSDYN
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 216 IQKE 227
           IQKE
Sbjct: 109 IQKE 112



 Score =  102 bits (245), Expect = 2e-24
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = +3

Query: 120 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 263
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 48


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -3

Query: 190  SSNCF-PAKMRRCWS 149
            S+ CF P+K+R CW+
Sbjct: 1112 SNRCFFPSKIRICWN 1126


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 199 VRPSSNCFPAKMRRCWSGGIPSLSWILALTFSIVSEA-STSNVMVFPVRVLTNICIVLLL 23
           V+  SN        C S  I  L WI  +   ++ +A +  N ++F   V   + IVL +
Sbjct: 221 VQMHSNLVTTSEEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQ-NVYKPLPIVLSI 279

Query: 22  *KTCL 8
            K CL
Sbjct: 280 VKNCL 284


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 199 VRPSSNCFPAKMRRCWSGGIPSLSWILALTFSIVSEA-STSNVMVFPVRVLTNICIVLLL 23
           V+  SN        C S  I  L WI  +   ++ +A +  N ++F   V   + IVL +
Sbjct: 221 VQMHSNLVTTSEEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQ-NVYKPLPIVLSI 279

Query: 22  *KTCL 8
            K CL
Sbjct: 280 VKNCL 284


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 6   SKHVFHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 185
           SK +   ++ +  FVK    + +   +  +   E V   + D   I  DQ+    AG   
Sbjct: 218 SKEIALNNDVLLFFVKVFRPEPLCERLFEASREEYVTRHLIDGRIIGCDQRISFIAGYMT 277

Query: 186 EDGRTLSDYN-IQKESTLHLVLRLR 257
           E+   LS +  + +E    +++ LR
Sbjct: 278 EEVSGLSAFKFMHREDVRWVMIALR 302


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 149 RPTTSHLCRETIRRWPHSFRL*HPERIHT 235
           +P    +C+   R++  S+ L   ER HT
Sbjct: 75  KPKRQFICKYCNRQFTKSYNLLIHERTHT 103


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 167 DETLLVWRNTFLVLDFSF 114
           D  ++  R +FLV DF F
Sbjct: 479 DAAMMALRTSFLVNDFGF 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,554
Number of Sequences: 336
Number of extensions: 2864
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)