Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060084.seq
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.6  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   3.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 215 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 114
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 198 YSSDTKCTHSGKSSTVALFLPKSKIRILGS 109
           Y+ D  CTH      +++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 190 GHQVHAQWKVVN 155
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 197 IRRTPSARTVESRQRSLSSYP 135
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 197 IRRTPSARTVESRQRSLSSYP 135
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 66   KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFH 170
            K +++   G+    L+P   +   V   RP TT+H
Sbjct: 934  KQSKVSWEGNTERVLVPGDQTEAGVFTLRPATTYH 968


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,783
Number of Sequences: 336
Number of extensions: 2727
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)