Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A24
         (1017 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.93 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   5.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 284  DYGLFQINDRYWCSKGASPGK 346
            DY     +  YW  KGA PGK
Sbjct: 2538 DYFNANFSLNYWIEKGADPGK 2558



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 960  PPXPPPXXXPPXPXXPXP 1013
            PP PP    PP P    P
Sbjct: 1376 PPIPPTSEKPPLPEELKP 1393


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 301
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 363


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 301
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 255


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 149 TRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTS 253
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 228 STRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQ 121
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,624
Number of Sequences: 336
Number of extensions: 3318
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28867160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)