Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A06
(936 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 44 2e-06
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 44 2e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 41 1e-05
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 40 4e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 40 4e-05
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 24 1.5
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 24 1.5
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 24 1.5
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 24 1.5
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 43.6 bits (98), Expect = 2e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 352 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 528
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 529 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 636
+LW+PDV++ N+A G + V +NGS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 43.6 bits (98), Expect = 2e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 352 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 528
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 529 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 636
+LW+PDV++ N+A G + V +NGS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 41.1 bits (92), Expect = 1e-05
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 352 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 528
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 529 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 636
+LW+PDV++ N+A G + V + GS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYV 119
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 39.5 bits (88), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 624
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 625 VSWI 636
++
Sbjct: 116 CLYV 119
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 39.5 bits (88), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 624
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 625 VSWI 636
++
Sbjct: 116 CLYV 119
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 24.2 bits (50), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 672 CIEXWSANVQALYPG-DGAVIRYTGAESVVPGGGC 571
C+ + LY G DG+VI E VV G GC
Sbjct: 337 CVPTQLGQMSMLYLGSDGSVILKNYKEMVVVGCGC 371
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 146 PKYCFVLPLPNVFIQYFRNH 205
P Y F +P P +F+Q F +H
Sbjct: 196 PPYLFFVPPPLMFLQDFLSH 215
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 146 PKYCFVLPLPNVFIQYFRNH 205
P Y F +P P +F+Q F +H
Sbjct: 429 PPYLFFVPPPLMFLQDFLSH 448
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 146 PKYCFVLPLPNVFIQYFRNH 205
P Y F +P P +F+Q F +H
Sbjct: 429 PPYLFFVPPPLMFLQDFLSH 448
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,279
Number of Sequences: 336
Number of extensions: 4299
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26271982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -