Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40116
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    62   1e-10
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   5.8  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   7.7  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = +2

Query: 32  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHES 124
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDS 31


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 86  NGIKKPRKTRHESTLGVSAII 148
           NGIK+  KTRH S + ++ II
Sbjct: 38  NGIKRGLKTRHVSMMALAGII 58


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 322 VLNMVYLIYLV-SVYFSKYFNTLFRH 396
           +L +VY  Y V  + F KYF  +FRH
Sbjct: 182 LLTLVYTPYTVFRMGFKKYFEMIFRH 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,149
Number of Sequences: 5004
Number of extensions: 54707
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)