Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40115
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 118 8e-28
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 31 0.26
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 28 1.4
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 2.5
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 27 2.5
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.5
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 3.3
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 5.7
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 7.5
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 10.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 118 bits (285), Expect = 8e-28
Identities = 54/85 (63%), Positives = 68/85 (80%)
Frame = +3
Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
+++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 67 INDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126
Query: 435 GLGPEKTSFFQALSIPTKISKGTIE 509
G+ P KTSFFQAL IPTKI++GTIE
Sbjct: 127 GMEPGKTSFFQALGIPTKITRGTIE 151
Score = 109 bits (262), Expect = 5e-25
Identities = 53/111 (47%), Positives = 70/111 (63%)
Frame = +2
Query: 479 PYQDFKGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 658
P + +G I +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEI
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEI 201
Query: 659 LDIKPEDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSLA 811
LD+ EDL + + + A+SL YPT HS+ N +KNL SLA
Sbjct: 202 LDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLA 252
Score = 33.9 bits (74), Expect = 0.028
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 80 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQ 169
K+ YF K+ L ++Y F+V DNV SQQ
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQ 37
Score = 29.9 bits (64), Expect = 0.46
Identities = 11/20 (55%), Positives = 19/20 (95%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIK 249
LRG++ ++MGKNTM+R+A++
Sbjct: 45 LRGTAELIMGKNTMIRRAMR 64
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 234 AQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLS 410
A H ++ + KL + G VG +FT EV E+ VQ AR GA+AP +
Sbjct: 76 ALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFT 134
Query: 411 VVIPA 425
VIPA
Sbjct: 135 HVIPA 139
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 IKDHWTTIQPSRNCCHTSRATLASC 318
I++HW + P R T +ATL SC
Sbjct: 159 IEEHWQLLCPDREKVQTWQATLGSC 183
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 281 FLEGWIVVQ--WSLMALRIIVFFPMSTILEPRSEILSAXSVASPRYRHP 141
F GWI+V W+L+A I F+P + E R I+ +A + + P
Sbjct: 587 FFRGWIIVIIIWTLIAALYITFYP---LYESRDTIVYLCKLAIGKAKAP 632
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 404 WGNGTRTS--WSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQWSLMALRI 231
W N RTS WS D+ + T+ + ++ + +L W++++ I + SL I
Sbjct: 27 WYNRLRTSMPWSNDYT--EIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAI 84
Query: 230 IVFFPMSTILEPRSEIL 180
F +L+PR +L
Sbjct: 85 ACFMFPVLVLKPRKFVL 101
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 736 WIPNLLLQPAFHCQWFQ 786
W+P LL P+ HC W +
Sbjct: 305 WLPQLLELPSKHCSWLE 321
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 254 WSLMALRIIVFFPMSTILEPR 192
W LM + +++F + ILEPR
Sbjct: 169 WGLMGINVVLFVVVQLILEPR 189
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.7
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 448 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 278
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 277 SRAGL 263
S L
Sbjct: 195 SEEEL 199
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 508 SIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 389
S P + L+GI AW E S R + T+ +AP
Sbjct: 291 SFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 219 KKHNDAQSHQRPLDNNPALEKLLPHIKGNV 308
KK NDA++ + L+NNP L P ++ N+
Sbjct: 288 KKLNDAENRIKELENNPTL-SFNPELEKNL 316
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 10.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 387 PGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK-ISKGTIESSTMYTS*SPVTRLEL 557
P AI + V + N E T +ALS K + G ++S +YT PVT ++
Sbjct: 470 PAAIQEETSVSKSFNIIAKCEDTGSMEALSDYLKPLQFGKVKSRVLYTGVGPVTETDI 527
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,902
Number of Sequences: 5004
Number of extensions: 79132
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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