Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40087
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.84 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    28   1.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.6  

>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 315 LNQYDLVKERSD--VVMYTYGYVEPLIQSQANNA 220
           L  YDL++E  +      TYG V+P++ SQA+ A
Sbjct: 58  LKLYDLLREHRNKGTATLTYGVVDPVLASQASKA 91


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 220  SVIRLRLNQWFYITISIHNYVASFFY 297
            S+ R RL  WF+I++ + NY  S  Y
Sbjct: 2178 SLFRRRLIMWFFISVFLQNYWMSSVY 2203


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +3

Query: 423 CSLEGFFIALLFAPYELYYKVVQKIGSQIIGFTAHVKKTVRPLSISDTSNT*NYCIKFKK 602
           C+   F I+L+ A     YKVVQK+   I      V+  V+ L +S  +N   Y   F  
Sbjct: 723 CAEGEFLISLVMALRLNEYKVVQKVYESIP--ITDVEHVVQELPVSYLANFMGYLSSFAA 780

Query: 603 EKYKIPFRTANAQSFNGYY 659
           E   I F     +S   Y+
Sbjct: 781 ETPHIEFHLRWMKSVLTYH 799


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 CSLEGFFIALLFAPYELYYKVVQ 491
           CS   FFI L  A Y  YY+VV+
Sbjct: 22  CSFAAFFIPLALALYTHYYQVVK 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,767
Number of Sequences: 5004
Number of extensions: 74992
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)