Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30111
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.37 
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    29   0.65 
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   3.5  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   8.0  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 423 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 292
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 227 PHVIVAVRGTTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 385
           P  I  + G  +  TLTA+L+      T L+T L+  +    PP    L++S+
Sbjct: 125 PDSIEGIPGCHIIYTLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 200 KEALDDDNKPHVIVAVRGTTVTRTLTANLKPLR-TSLTRLDTM 325
           +E   + N+ +VIV + G  V    T  LKPL   S ++ DT+
Sbjct: 59  EEVSQEPNQKNVIVGISGLHVVNLPTLTLKPLYWPSASKNDTL 101


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 247 AWNYSYTNTDGKPETITYFADETGYHAQGESIPQVASATS 366
           A NYS    +G+P+   YF D    HA G     +AS  S
Sbjct: 499 ARNYSLQYLNGRPDVNDYFKD--FLHATGTQTAALASCGS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,247
Number of Sequences: 5004
Number of extensions: 36300
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)