Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   1.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    28   1.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   4.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   7.2  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   9.6  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   9.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.6  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 357 DESTALTMPVGQLREEVTVESNQILTTQ 440
           ++S AL + V QLREEV    NQ+L  Q
Sbjct: 304 EQSKALRILVSQLREEVICLKNQLLAHQ 331


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 734 PTEERGTGLGRCVAYFNAGTADWGSPADVEAVLEEDVHVSRLRANKRPQPPRLLTPVMRS 555
           P+E     L R  +Y  A  +     + +++ L     V+R+    RP  P ++TP  R+
Sbjct: 448 PSETSLADLSRVPSYKEATRSAVPLESPLQSTLPSYEDVARIEHLSRPPSPGIVTPPQRT 507

Query: 554 AP 549
           +P
Sbjct: 508 SP 509


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 694  RTSTLEQRIGEVRRMWKRCWRR 629
            R  TLE+ + EV  +WK+ W R
Sbjct: 1067 RIQTLERSLEEVTPIWKKQWER 1088


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 495 HLLHQYHHAAEPLVTVRVAA--SLVFGSIRRSPPLEVDLPASSKRCFRRSLLVF 340
           +L H  +   EPL    +    S VF S RR P    DL  SSK C  + L  F
Sbjct: 81  YLYHSTNSQLEPLEVFHLHKLHSAVFTS-RRDPSFADDLFESSKPCLNQLLSYF 133


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 764 LEEKSRHRPAPTEERGTGLGRCVAYFNA 681
           L+  S H P+   E  +GL + + YFNA
Sbjct: 284 LQSDSNHVPSVLTELRSGLDQTIHYFNA 311


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 46   VQPSSIYGGFARSCVAKTSEVSTNVENEYLVTDEDGCAKDPAIF 177
            V+  +IYG   R  +     + + V    +  D+ GC ++P +F
Sbjct: 878  VERINIYGEQTRKSIKIRKIIDSEVTEWDVSVDDSGCIRNPQLF 921


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 750 PTPPGADGGAGYG 712
           P PPGA+GG G G
Sbjct: 76  PPPPGAEGGPGAG 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,403
Number of Sequences: 5004
Number of extensions: 54446
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)