Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30088
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 62 9e-11
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 50 3e-07
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 28 1.4
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 27 3.2
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 26 5.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 7.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 7.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 7.5
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 7.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 9.9
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 9.9
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 62.1 bits (144), Expect = 9e-11
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +2
Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
LN Y MR REWYGWHFPE+GKII DN + +V+ ++ T
Sbjct: 177 LNTYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAMGMRT 216
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/79 (39%), Positives = 46/79 (58%)
Frame = +2
Query: 89 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
M +L ET AGYAIFK D+ L + D L ++ +PEGAS ++KL++F KFE T + +
Sbjct: 1 MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59
Query: 269 LQLLRARYLSP*RKLLRSM 325
L+ + S LL +
Sbjct: 60 SALVEGKVSSKLSSLLEGL 78
Score = 56.4 bits (130), Expect = 5e-09
Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 495 DSYGLGLAHSLSRYKLKFSPDKIDTMIVQAQCXXXXXXXXXXXXS*GAVNGMVGISQSLG 674
++ LGL+HSLSR+KLKFSPDK+DTMIVQA + +G
Sbjct: 137 NAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMG 196
Query: 675 KSSLITLCL*KW*THWHTRL-CIQD*FI*HLPEDLEEKVKEAAEISMG 815
K L + R C + F LPE++E +K AAEISMG
Sbjct: 197 KIIQDNLAYARVIKAMGMRTKCSETDFSDILPEEIEATLKSAAEISMG 244
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 50.4 bits (115), Expect = 3e-07
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
+N + MR +EWY WHFPEL KI+ DN + +V + +T
Sbjct: 184 INTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDKT 223
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
LGL HS SR K+KF+ ++ D MI+QA
Sbjct: 148 LGLGHSYSRAKVKFNVNRNDNMIIQA 173
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 355 VGDSKLGSAIREKFD-LQCVSNTNVQELLRCIRSQMDSLLAGL 480
V D L ++I+ + D ++C ++ Q+LLR IR D LL L
Sbjct: 96 VQDKNLATSIKSEIDAIECDTSELTQDLLRGIRFHGDKLLKQL 138
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 638 REWYGWHFPELGKIITDNTLFVKVVNSLAHE 730
+EWY FPEL ++ + + K V+SL ++
Sbjct: 142 KEWYHDRFPELSSLVLNAFDYCKTVSSLLND 172
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 449 RIHRSSSWTLVFDTHCKS--NFSLMALPSLESPTRS 348
R HRSS V+ HC + ++ LPSL TR+
Sbjct: 221 REHRSSGKNFVYCDHCSNVYHYDCSPLPSLNKETRN 256
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 209 VVKLKNFVKFEDTTEVWQPLLQLLRARY 292
V+ F F D T+ WQP+L + RY
Sbjct: 160 VIDTPGFGDFIDNTDCWQPVLTDIEGRY 187
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 486 KRNDSYGLGLAHSLSRYKLKFSPDKI 563
+RND L HS SRY K P K+
Sbjct: 91 RRNDEQVLRSIHSFSRYAAKMFPGKV 116
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 419 LMSRNCSGVFAHRWTVS 469
+ SR C VFAHRW S
Sbjct: 8 IYSRKCECVFAHRWKPS 24
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = -1
Query: 387 SNGTTQLRVTDKELILNLFTNILLKSFL*GLRYLALNSCSSGCQTSVVSSNFTKFFNLTT 208
S+ ++ L T L ++FT + S + Y +NS +S +T+ + S+ + +
Sbjct: 273 SSSSSYLVETSSTLTDSVFTTVTATSDSSVITYTLINSVTSSSETTNLPSSSSSLVTIGE 332
Query: 207 VEAPSGVLN 181
PS +L+
Sbjct: 333 SSFPSSLLS 341
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 136 QLKYGIARRCLE*NQHTGSTLIQLFNKYNQYH 41
Q+ YG+++ + G+T +Q FN+Y H
Sbjct: 921 QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 491 SFLGSPARRLSICERIHRSSSWTLVFDT 408
S+L +P RLSI + + SSS T +T
Sbjct: 436 SYLAAPKERLSISDNMSSSSSQTATVNT 463
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 92 LVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFV 232
L L E Y LLDE KLS + +Y+ G +K+ +F+
Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 694 SVISDDFPKLWEMPTIPFTAPHD 626
++I D P LW P+ P HD
Sbjct: 408 NLIDDSSPLLWREPSFPLIEHHD 430
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 161 IDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPLLQLLRA-RYLSP 301
+ L Q + P ASTVV+ + + T PLL +L R +SP
Sbjct: 740 VSTLKQALSRPHTASTVVRSPSEINLTRQTSNRVPLLDMLNLNRAMSP 787
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,046
Number of Sequences: 5004
Number of extensions: 64445
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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