Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30086
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    46   4e-06
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.94 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.8  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    26   3.8  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   5.0  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.0  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +1

Query: 142 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 252
           K+ ID T    D I DV  FEKYL + +KV+GKT NL
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNL 47



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 261 VVVARD-KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 425
           VVV+R+  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 51  VVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 126 LDAFAADFATLHSFFASLLMQLGFFS 49
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
 Frame = +1

Query: 184 LDVGNFEKYLKEHVKVEG------KTNNLRITLS-SPGIRRKSLSPQTFLFQR 321
           LD  +F K   +H++V+        +++ RI+ S  P +RRKSL P+  +FQR
Sbjct: 111 LDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCPVLRRKSLLPKPKMFQR 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLR 255
           K   DC +  + ++  + N +K + +HV  E K + L+
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSELK 856


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 187  DVGNFEKYLKEHVKVEGKTNNLRITLSSPG 276
            + GN +KY + ++KV GK N+  +T  +PG
Sbjct: 955  EAGNLKKYDQPNLKVSGK-NDSFVTHHTPG 983


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 199 FEKYLKEHVKVEGKTNNLRIT 261
           F K  KEH+ V G  N+LR+T
Sbjct: 278 FAKRHKEHIAVYGDDNDLRLT 298


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 257 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 367
           SR R +  +  ++  R SF  +VPE +  TLP+   F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 337 KYFRYLFEKGMSAVIATFVLSL 272
           K+FRY+F   ++ ++  FVL++
Sbjct: 198 KWFRYIFRVSVAVILLDFVLNM 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,574
Number of Sequences: 5004
Number of extensions: 29051
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)