Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30076
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 145 4e-36
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 145 4e-36
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 145 4e-36
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 92 6e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 87 3e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 64 1e-11
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 33 0.037
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.81
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.1
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 28 1.4
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 27 2.5
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 27 2.5
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.3
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 4.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.7
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 26 5.7
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 7.5
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 25 7.5
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.9
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 25 9.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 9.9
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 9.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 145 bits (352), Expect = 4e-36
Identities = 61/87 (70%), Positives = 74/87 (85%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPP 236
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
ARPTDKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 138 bits (334), Expect = 7e-34
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T +S+ RFEEI KE S++IKK+
Sbjct: 156 DTT--GWSQARFEEIVKETSNFIKKV 179
Score = 93.1 bits (221), Expect = 3e-20
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETGV+KPG IV F+PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK+
Sbjct: 264 RVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKD 317
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 145 bits (352), Expect = 4e-36
Identities = 61/87 (70%), Positives = 74/87 (85%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPP 236
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
ARPTDKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 138 bits (335), Expect = 5e-34
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T +S+ RFEEI KE S++IKK+
Sbjct: 156 DTT--GWSQARFEEIVKETSNFIKKV 179
Score = 93.1 bits (221), Expect = 3e-20
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETGV+KPG IV F+PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK+
Sbjct: 264 RVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKD 317
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 145 bits (352), Expect = 4e-36
Identities = 61/87 (70%), Positives = 74/87 (85%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPP 236
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
ARPTDKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVG 263
Score = 138 bits (334), Expect = 7e-34
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T +S+ RFEEI KE S++IKK+
Sbjct: 156 DTT--GWSQARFEEIVKETSNFIKKV 179
Score = 93.1 bits (221), Expect = 3e-20
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETGV+KPG IV F+PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK+
Sbjct: 264 RVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKD 317
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 92.3 bits (219), Expect = 6e-20
Identities = 40/87 (45%), Positives = 61/87 (70%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKM
Sbjct: 327 KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 386
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKLA 261
D +SE R++E ++S +++++A
Sbjct: 387 DEPSVQWSEERYKECVDKLSMFLRRVA 413
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 86.6 bits (205), Expect = 3e-18
Identities = 43/86 (50%), Positives = 56/86 (65%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+
Sbjct: 266 RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D +SE RF+EIK VS ++ K+
Sbjct: 326 DLMS--WSEDRFQEIKNIVSDFLIKM 349
Score = 48.4 bits (110), Expect = 9e-07
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 255 IGYNPAAVAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+G+ + V FVPIS G N+++ + W+KG L+ ALD ++PP
Sbjct: 350 VGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPP 397
Query: 429 ARPTDKPLRLPLQDVYK 479
+P KPLRL + DVY+
Sbjct: 398 EKPYRKPLRLSIDDVYR 414
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 64.5 bits (150), Expect = 1e-11
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 183
D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D
Sbjct: 128 DYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVD 180
Query: 184 STEPPYSEPRFEEIKKEVSSY 246
EP E E+++ +S Y
Sbjct: 181 MVEPDMIELVEMEMRELLSEY 201
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 396 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVG 509
L+EA+D+ + P R TD P + ++DV+ I G GTV G
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTG 272
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 509 RFETGVLKPGTIV--VFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 658
R E G LK G + V +++ T V +EM + L AV GDN G ++++
Sbjct: 273 RVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSI 324
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 33.1 bits (72), Expect = 0.037
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 196 PYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPF--LDGTETTCWSLQPKCLGSRDGRWSV 369
PY +P+ I K + I K QL L C F LDG + + +S P + +G SV
Sbjct: 455 PYLKPKL-VISKSFGTLIVK-NHNQLSLLKCTFSNLDGNDCSWFSYLPNAIVLANGT-SV 511
Query: 370 KKAKLTENASLKLSMPSCHLPAPLTSPCVFPC 465
A TE++S+ + P+ L P PC
Sbjct: 512 FWAVATEDSSIYIYSPAGRLLLPPVVVAATPC 543
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.81
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +1
Query: 19 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 198
M+ G + D A+L++A QT EH + +K +I+ NK+D
Sbjct: 125 MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIILQNKVDLIRES 178
Query: 199 YSEPRFEEIKKEVSSYI 249
+E ++ I K + +
Sbjct: 179 AAEEHYQSILKFIKGTV 195
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 436 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 299
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 637 YIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQH-TSFKSPTGTVPIPPILYTSCR 461
YI+SR SF+ V + D + + G + T F H +S +P IPPI TS
Sbjct: 177 YILSRISFIPRVSVVPYIPDAAYGIYGSP-STFTQFNHMSSMVTPENPYGIPPIALTSAG 235
Query: 460 G 458
G
Sbjct: 236 G 236
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 220 EIKKEVSSYIKKLATTQLLSLSCPFLDGTETT 315
+IKK ++ K LAT L LS PF D + T
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRT 135
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 220 EIKKEVSSYIKKLATTQLLSLSCPFLDGTETT 315
+IKK ++ K LAT L LS PF D + T
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRT 135
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 585 DLTSVVMLAGEKTTMVP--GFNTPVSNLRRARYQYHRFCIRLAGEDAGACQWGGQVA 421
D+ + +M +P G T S L + Y L G AGAC++GG +A
Sbjct: 289 DIRTWIMFVSSVLLNIPNGGIGTFSSLLIKGTMGYDTLQTLLMGLPAGACEFGGLIA 345
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 670 FLDGHVLYVETYIVSRYSFLESFV 599
F DGH+L ETY+ LES V
Sbjct: 528 FFDGHLLASETYVGGHVESLESGV 551
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 473 IQNRWYWYRARRRFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 652
IQ + R ET +I+ SP N + S++ ++ QE PG+ G
Sbjct: 139 IQRESIPFHKRDNIETSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVTGTTFS 198
Query: 653 NVSVKE 670
+ + +E
Sbjct: 199 SQAPEE 204
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 589 HRFDFSSDVGGGKDNNGTWFQHTSFKSPTGTVPI 488
H++DF D K ++G+ H + +PT + P+
Sbjct: 59 HKYDFEIDRDSLKSDSGSPRLHQNATAPTSSTPL 92
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 187 TEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWS 366
+EPP + +E+ KKE+ I+K QLL S L G E + + L+ L G +
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK---RQLLETS---LIGLEDSIYRLEGSYLEKTSGTGN 62
Query: 367 V 369
+
Sbjct: 63 I 63
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 197 HTVSPDLRKSRRKYPHTSRNWLQPSCCRFRAHFWMARRQHVGAFN 331
H S D Y H N+LQ S R +++RR G F+
Sbjct: 8 HVASEDQGHFNTAYSHEEFNFLQSSLTRKLGPEYVSRRSGPGGFS 52
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 284 ESDSSWVVANFLMYEDTSFL 225
ESDS WVV+ + ++D+ +L
Sbjct: 147 ESDSPWVVSLYYAFQDSLYL 166
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 272 SWVVANFLMYEDTSFLISSNLGSLYG 195
SW A++ + T LI+ LG +YG
Sbjct: 85 SWFPASYSLTVGTFILIAGRLGDIYG 110
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 148 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKLATTQLLSLSC----PFLDGTET- 312
+K L++ + K+ PR KKE+SS ++ T + S P + GT+T
Sbjct: 43 IKYLMLNLTKVGLRRFWSQSPRRNAPKKELSSLLESTITPKAFSKRTEEPNPIMQGTDTI 102
Query: 313 -TCWSLQPKCL 342
+ L KCL
Sbjct: 103 PMPFYLHAKCL 113
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 265 TQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLT 444
T L L+ F T+T W++ PK L R R + A L N L + H P +
Sbjct: 360 TPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQS 419
Query: 445 SP 450
SP
Sbjct: 420 SP 421
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 295 LDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLK 405
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,991
Number of Sequences: 5004
Number of extensions: 69152
Number of successful extensions: 246
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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