Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30073
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   145   2e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   145   2e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    65   3e-12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   0.63 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   1.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   4.4  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    24   5.9  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    24   5.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   7.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   7.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    24   7.8  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    24   7.8  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    24   7.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  145 bits (351), Expect = 2e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = +3

Query: 3   LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
           +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 372 IAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 431

Query: 183 LEKDYEEVGMDS 218
           LE+DYEEVG DS
Sbjct: 432 LERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  145 bits (351), Expect = 2e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = +3

Query: 3   LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
           +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 IAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 183 LEKDYEEVGMDS 218
           LE+DYEEVG DS
Sbjct: 428 LERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 64.9 bits (151), Expect = 3e-12
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
 Frame = +3

Query: 12  VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 182
           ++ +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 183 LEKDYEEVGMDSXXXXXXXXXXY*PMKY 266
             + Y+E G+D             P++Y
Sbjct: 421 EYQQYQEAGIDEGDEDYEIEEEKEPLEY 448


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 64  GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 237
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 238 EPKSTNQ*NIF 270
           EP+ T    IF
Sbjct: 208 EPRFTKFFRIF 218


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 136  VWRRESSPKPVRTWLPSR-RITKKSAWTPLKARV--REPKSTNQ*NIFYGALAPFYI 297
            V+RR++S +P    +         SAW    A V  R P      N ++GALAP Y+
Sbjct: 1234 VFRRQTSKEPYPARMDDLGSAIFYSAWNQCIAEVIRRNPIDIYHINDYHGALAPCYL 1290


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 27   CMLSNTTAIAEAWARLDHKFDLMY 98
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 243 RLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPY 136
           ++ H  LQ  P    +NP+   PG      TLPP Y
Sbjct: 411 QMKHLSLQEEP---KQNPTPAAPGAFPNSNTLPPRY 443


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 67  LALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 177
           +AL   +   T S L+ +  SV++W   S  K +R W
Sbjct: 105 IALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQW 141


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 109 LSCTGTSVRVWRRESSPKPVRTWLPSR 189
           LS  GTS + +    SP PVRT L S+
Sbjct: 17  LSNNGTSNKAYSVPKSPAPVRTDLFSK 43


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 136  VWRRESS--PKPVRTWLPSRRITKKSAWTPLKARV--REPKSTNQ*NIFYGALAPFYI 297
            V+R+++S  P P R    S  I   SAW    A +  R P      N ++GALAP Y+
Sbjct: 1229 VFRKQTSAEPYPARMDDLSSAIFY-SAWNQCIAGIIRRYPIDVYHINDYHGALAPCYL 1285


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  SSTSCTPSVLSCTGTSVRVWRRESSPKPV 168
           ++T+ TP+  +C   +  +WRR    +P+
Sbjct: 627 NATNPTPTCTNCQTRTTPLWRRSPDGQPL 655


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 133 RVWRRESSPKPVRTWLPSRRIT 198
           R W   + PK V  W P+ + T
Sbjct: 8   RFWNHPAGPKTVHFWAPAMKWT 29


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 EGMEEGEFSEAREDLAALEKDYEEV 206
           E MEE   SEA E++   + D+ E+
Sbjct: 241 EAMEEEALSEAEENIPKKKPDFNEL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,085
Number of Sequences: 5004
Number of extensions: 19412
Number of successful extensions: 70
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)