Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30069
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.67
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 28 0.89
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 3.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 4.7
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 25 4.7
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 25 6.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 6.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 8.3
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 8.3
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 8.3
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 28.3 bits (60), Expect = 0.67
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 141 PPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWQLYFVPASVLQTQEFPMTLNR 317
PP P S +++ IL + L +R+ C W YF+ SV + +T+N+
Sbjct: 127 PPFPESIDVARFSSEEKKILSRIRRK--LDLRIITCLWITYFLSRSVTYSISLSLTMNK 183
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 0.89
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 312 LVSSETLEFAKLMLEQNTAATRTISISSLSHTLKIPSLKYSYNLWLGLLLEQ-----KWV 148
L S ++ +F+ + + T R + ++ S +PSL Y +N W + L+ W+
Sbjct: 350 LESDQSDDFSSAVPTKMTVRFRDMIETTFSVLQNLPSLDYQFNFWRSVQLKPMMQYVNWL 409
Query: 147 EVVY 136
E Y
Sbjct: 410 EAFY 413
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 340 HFSSSNVISSKPCTNDTTLGSSYYMII*NKHIVS 441
HFSSS V S + +TT GS + + NKH+ S
Sbjct: 82 HFSSSPVEESSTVSPETTTGS--FTPLNNKHLKS 113
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 4.7
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 69 PIIKSGKMQLSADPRRAD 122
P+IK+GK ++SA+P + +
Sbjct: 770 PVIKNGKAEISAEPTKEE 787
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 97 NCIFPLFIIGPQIFVAVT 44
N I+ LF++GP IF+ T
Sbjct: 5 NIIYALFLLGPSIFLKAT 22
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 282 KLMLEQNTAATRTISISSLSHTLKIPSLKYSYNLWLGL 169
K ++ +R++S + ++ +KI S + Y+LW G+
Sbjct: 44 KTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGI 81
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 318 ICLVSSETLEFAKLMLEQNTAATRTISISSLS 223
+C++ ETL +M +T +T+ +S+L+
Sbjct: 258 LCVLCPETLPVINIMNYSSTTGEKTVQVSTLA 289
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 45 VTATNICGPIIKSGKMQLSADPRRADRERRYKPPP 149
++ T + P ++L+ PRR R R+Y P P
Sbjct: 81 ISTTTLAPP--SPSPLRLNEAPRRRGRPRKYPPKP 113
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 250 AHHFNLIIKPHIENTIPKI 194
A N+I+ HI NT+P+I
Sbjct: 295 ARKLNMILMHHIRNTLPEI 313
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -2
Query: 164 WSRSGWRWFIATFSVSATWIC*QLHLSTFYYRPTNICSGYSS 39
W + + W + T +T+ C +S YRP+ + + S
Sbjct: 252 WDKMVYYWDLNTGDAISTYNCESGQISNIVYRPSGAVNPWGS 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,507
Number of Sequences: 5004
Number of extensions: 38725
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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