Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30063
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 116 1e-27
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 112 3e-26
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.069
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 27 1.5
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.4
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.9
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 116 bits (280), Expect = 1e-27
Identities = 48/81 (59%), Positives = 65/81 (80%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
+I KRS++KPF+KV+NYNHLM
Sbjct: 61 RIAKRSRVKPFIKVINYNHLM 81
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 TRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
TRY ++ K + +P++R + + FEE+Y++GK+ WFF LRF
Sbjct: 83 TRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 112 bits (269), Expect = 3e-26
Identities = 46/81 (56%), Positives = 64/81 (79%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
+I +RS++KPF+KVVNYNHLM
Sbjct: 61 RIARRSRVKPFIKVVNYNHLM 81
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 TRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
TRY ++ K +A K+P +R R + FEE+Y+SGK+ WFF LRF
Sbjct: 83 TRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.069
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 104
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 18 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 101
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 183 GKNKIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKN 290
G + I R K P K+VNYNH H S KN
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHF--HSSSCQSEAKN 61
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/73 (23%), Positives = 26/73 (35%)
Frame = -1
Query: 411 NLSFWKNHLFFPLLYLSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVASSDYSLQ 232
N+ FW F P L+ + LKR G + + L + + S L
Sbjct: 278 NVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLH 337
Query: 231 PSRKALSWTSCGF 193
+ L WT G+
Sbjct: 338 DTSPDLDWTQRGY 350
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 118 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 29
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 212 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 99
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 275 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 409
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 165 KVHKRMGKNKIHKRSKIKPFVKVV 236
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 269 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 385
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 269 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 367
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,674
Number of Sequences: 5004
Number of extensions: 35760
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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