Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30060
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 147 9e-37
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 146 2e-36
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 33 0.024
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 29 0.68
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.6
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.1
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.3
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 25 6.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.3
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 8.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 8.3
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 147 bits (357), Expect = 9e-37
Identities = 79/173 (45%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
IDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3 IDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62
Query: 181 VSRLAR--HMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 354
+S++A K + G G +D RL +PK++VAAL T+ ARARIL AGGE+
Sbjct: 63 ISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEV 122
Query: 355 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
LT DQLALRAPTG TVL++G+++AREA RHFG P H PYVR++G K
Sbjct: 123 LTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 146 bits (355), Expect = 2e-36
Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
IDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3 IDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62
Query: 181 VSRLAR--HMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 354
+S++A K +S G +D R+ +PK+++AAL T+ ARARIL AGGE+
Sbjct: 63 ISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEV 122
Query: 355 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR++G K
Sbjct: 123 LTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 33.5 bits (73), Expect = 0.024
Identities = 28/125 (22%), Positives = 52/125 (41%)
Frame = -3
Query: 405 YCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVILTVPTTTAIK 226
Y + +ST + + S F+ +QN+ + F N +S + + Q++ I PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSAF- 215
Query: 225 PSRVGLLHVARQTRHRDWWPVDTAHKEPA*NDLIEFGICTSGQVSVKLYK*PQVNILRFN 46
S++ ++ T + + P+ FG TSG + P + +
Sbjct: 216 TSQLNASPFSQNTSSNSFTGSNPVQNNPSSFGSSSFGSATSGPSAFGGISQPNSSFVNSG 275
Query: 45 FGAPN 31
G PN
Sbjct: 276 QGIPN 280
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 357 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVILTVPT 241
KN+ SS + TS + N+ +S+R +R +QS V + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 259 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 372
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 360 SKNFSSSSQNACTSFFGNMKSSHRH 286
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 338 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 478
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -3
Query: 492 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 328
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 327 CTSFF 313
C+SFF
Sbjct: 364 CSSFF 368
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 516 LFQSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 352
LF S G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 630 LFLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 398 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRD*KSKAQSS 532
+ +W VS + CV L L+ +HR++ L M P KS SS
Sbjct: 30 KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 6.3
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -3
Query: 465 SWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 286
S S + + TS S + +S S+ S S + SSSS + +S + +SHR
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181
Query: 285 LRYLVQSHVILTVPTTT 235
+ S+ P TT
Sbjct: 182 TSHKSSSYRPTVFPYTT 198
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 364 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 459
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 398 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 487
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 154 SRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDVRL 270
S PP S + +R + T+ GF+ + S + +D++L
Sbjct: 390 SNTKTPPASARQSSRRTRSTSGKGFETKISINLDSDIKL 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,110
Number of Sequences: 5004
Number of extensions: 51214
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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