Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30054
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   4.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.3  

>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 186 SALRCCDMGMISLDLKHIYVVVKVKNILSVCCLVMRM 296
           SAL  C  GM+ LD+ H+ ++ K   + +   L M++
Sbjct: 151 SALLVCLKGMLQLDMPHVNILSKADLLCTYGTLPMKL 187


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 669 FDITHLHYQWLDTHLIRKQQLLYNFLQLLHATTSYLYKISIRI 541
           +DI   H   LD+ +I  +   YNF        SYL +I  ++
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKV 163


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 270 SVCCLVMRMFLILLVLNDRFYSNPQKSYDYF 362
           SV CLV   F I+     R Y N Q  +DYF
Sbjct: 334 SVKCLV-HWFQIMRSAEFRMYDNDQLGHDYF 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,591
Number of Sequences: 5004
Number of extensions: 53255
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)