Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30053
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   2.9  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    27   3.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.8  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 478 QSQAAAYHHPILGGVHSHHNRMPHPHFRDTSSNLRVSGV 362
           QSQ + Y  P+L  VH +   +P P  + T +NL  SG+
Sbjct: 272 QSQPSPYSRPLLSSVHPN---LP-PGSQSTPANLNQSGI 306


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 YELHLESGGGRQRLGSAPGIAGVHGRRDHSPSGGPYARLPT 552
           YEL +E  GG  RL   PG   ++G+   + +    A  PT
Sbjct: 93  YELEVEFNGGDWRLRKYPGQKHINGKPPSNSNSTEDASKPT 133


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 511 HVAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPHPHFRD 392
           HV H +++   +S A    HPI    HSH++  P  H  D
Sbjct: 252 HVRHKVKRLSVRSPA----HPIYQTQHSHYDETPTSHHPD 287


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 474 LCPWH--CWSPWAT*PLTIRWAVCSFA 548
           LC  H   WSP  + P +  W VC FA
Sbjct: 141 LCRIHSVAWSPLVSLPSSSPWGVCLFA 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,955
Number of Sequences: 5004
Number of extensions: 63325
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)