Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30052
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.8  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.7  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +3

Query: 165 WTELANFGLELFVEVQRRLKR--WINMKMLGINKNNNFVFPLMCPPSD--GFLVFVLSLF 332
           +T L+NF L L  E+  R++   ++++   G NKN+  + PL+   S   GF  + LS  
Sbjct: 352 YTMLSNFTLSLQKEIDERIRNLLFVSLSSGGDNKNDTGI-PLIQSSSSKVGFGPYALSKD 410

Query: 333 *TTA*VFYLSIKALRS 380
             TA  F+  I  L++
Sbjct: 411 LITAKSFHKCILLLKT 426


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 157  VSFSETNEQQFIFIYNNLILAYRGFSLIQFSLT 59
            V+  + N  +F+F+Y  ++LAY   SL+ F  T
Sbjct: 926  VNSPDVNNNKFLFVYGTMLLAY---SLLDFLRT 955


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 187 PKLANSVQPFVSFSETNEQQFIF 119
           P+L  S++P++S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 727 ISDLLWLFTGLRYILVFIYFFIAI 656
           + D+ + F G  + L+F+YFF+ +
Sbjct: 46  VVDVKYYFEGFSHSLLFVYFFLTL 69


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 275  FSFDVSPVGRIPCVCFKFILNNSLGLLFI 361
            FS DV  V  +  + F F   NS+ +LFI
Sbjct: 1007 FSNDVYKVDEVVSLTFMFFFRNSIQVLFI 1035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,088
Number of Sequences: 5004
Number of extensions: 54696
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)