Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30044
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   0.99 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   2.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   4.0  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    24   9.3  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 151 VGSGARVNVFAASSGRVSKTV 89
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 209 VLYTEVDNCLFPRPRAYLNNEIKNYLR 289
           + Y EV+  L PRP AY +  I   +R
Sbjct: 723 ITYNEVETILGPRPYAYKHLNISELMR 749


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 236 DSYPPRCRERHSHSHGVVSHI 174
           D YPP  +E+H + H ++  +
Sbjct: 225 DQYPPMTKEQHKYIHAMLRQL 245


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 200 ESGVLYTEVDNCLFPR 247
           E  +++ ++DNCL+P+
Sbjct: 4   EQKIIFFDLDNCLYPK 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,902
Number of Sequences: 5004
Number of extensions: 21523
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)