Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30042X
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    71   1e-13
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   3.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC1F12.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = +1

Query: 256 DSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPALGVKVDAKPGR 435
           DSY++P  +++    R L+VD               T+ DVIHS  +P+LG+K D  P R
Sbjct: 140 DSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSR 199

Query: 436 LNHTNFFINRPGIFFGQCS 492
           LN  +  I+R G+F+GQCS
Sbjct: 200 LNQVSLSIDREGLFYGQCS 218



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 59  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 238
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 239 F 241
           F
Sbjct: 129 F 129


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 377 TSVAVIIIRIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESIQY 246
           TS++   + I    G I+RL    S N + F SL   I E+ +Y
Sbjct: 822 TSISNTRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINETGEY 865


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 322 DYLHLIVGIHYFLFHWMGLYMSQF 251
           D+  L++GIH F +H   LY   F
Sbjct: 398 DFWSLVIGIHVFGYHVYWLYPIAF 421


>SPAC1F12.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 37

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  YLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIA 133
           Y II L  N +  ++   G I+E I T+IPA  LI  A
Sbjct: 2   YDIILLKINTHTVKY---GSIVEFIWTLIPALILILHA 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,450
Number of Sequences: 5004
Number of extensions: 24569
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)