Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10508
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 101 6e-23
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 96 3e-21
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.90
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 2.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.6
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 8.4
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 8.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 8.4
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 8.4
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 25 8.4
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 8.4
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 8.4
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 101 bits (242), Expect = 6e-23
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +3
Query: 42 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 221
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 222 FKTNFGGGKST 254
+T+FGGG+ST
Sbjct: 60 LRTHFGGGRST 70
Score = 56.0 bits (129), Expect = 3e-09
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 FALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 403
FALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 72 FALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 95.9 bits (228), Expect = 3e-21
Identities = 44/71 (61%), Positives = 54/71 (76%)
Frame = +3
Query: 42 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 221
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 222 FKTNFGGGKST 254
+T++GGG++T
Sbjct: 60 LRTHYGGGRTT 70
Score = 56.0 bits (129), Expect = 3e-09
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 FALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 403
FALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 72 FALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 293 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 391
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 159 EIREKLAKMYKVTPDVVFVFGFKTNFGG 242
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 208 CSYSVSRQTSEVASQLIRFDLRHTRSGQEVRAQAQVSPP 324
C+Y + Q S VA +++R L H R+ E+ PP
Sbjct: 592 CNYLSADQLSHVA-EILRAALPHLRNTDEIEIDVSAMPP 629
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 274 VVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLL 149
++D S +DLPPP ++KP T +L +R S +L
Sbjct: 565 MMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 74 ASANSRCSFTHFELFSII 21
+S SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 287 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 391
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 241 PPKFVLKPNTNTTSGVTLYILASFS 167
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 293 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 394
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 169 SRISVLLTVGFPGCKTSQTICLRANNL 89
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 220 VSRQTSEVASQLIRFDLRHTRSGQEVRAQAQVS 318
++ +TSE +S+ FDL +S R Q+ VS
Sbjct: 1 MAERTSESSSESASFDLEKQQSNHHDRYQSSVS 33
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 335 EKKRPTRKQRKERKNRMKKVRGT 403
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 50 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 166
+NS++S + +Q + ADG R + + Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,419
Number of Sequences: 5004
Number of extensions: 38318
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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