Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10503
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   157   1e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    75   1e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    69   6e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    42   8e-05
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.4  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   4.4  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.8  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  157 bits (382), Expect = 1e-39
 Identities = 68/84 (80%), Positives = 79/84 (94%)
 Frame = +1

Query: 1   KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
           KNS+YFVEWIP+NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFL
Sbjct: 336 KNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395

Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
           HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 8/88 (9%)
 Frame = +1

Query: 1   KNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTA 156
           K +  FV+W P   K  +CD PP+ ++         A   + N+T+I E + R+  +F  
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397

Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
           M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDL 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
 Frame = +1

Query: 16  FVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTAMFRRK 171
           FV+W P   K  +C  PP+ +          A   + N+T+I E + R+  +F  M+ ++
Sbjct: 347 FVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 406

Query: 172 AFLHWYTGEGMDEMEFTEAESNM 240
           AF+HWY GEGM+E EF+EA  ++
Sbjct: 407 AFVHWYVGEGMEEGEFSEAREDL 429


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +1

Query: 16  FVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 186
           F+ W P +++ A+    P      +++   + N T+I  LFKR  +Q+  + +R AFL  
Sbjct: 348 FIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQ 407

Query: 187 YTGEGMDEMEFTEAESN 237
           Y  E + E +  E +S+
Sbjct: 408 YKKEAIFEDDLNEFDSS 424


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 103 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 210
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 495 RYVAVQVVFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 605
           R++  + + TFP    D + QLWNV     L S +++
Sbjct: 65  RFIFKRFILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 60  HSPSWSQDGRHLHWKLHRHP 119
           H   +    RH +WKLH HP
Sbjct: 65  HKQKFEHQFRHGYWKLHPHP 84


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 250 QGRSCCSQPQ*TPSRPCPRRCTNARKPC 167
           +G SCCS+   +PS   P  C+  +K C
Sbjct: 221 EGSSCCSKKDSSPSEK-PSCCSQEKKSC 247


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 444 SYYINTKSKSIVDLSKGERWKGG 376
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 201  ALAGVPMQESLAPEHSGEL---FRDALEQLLDGGGVSNEGGGHLETTRGNVAH 52
            A  G+P  +S+   HS EL   F   L+  ++    SNE   H + TR  + +
Sbjct: 1212 ASKGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY 1264


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 417 FCFSYLYSNFNSFRLQHA**NNLGSTR 497
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,355
Number of Sequences: 5004
Number of extensions: 54830
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)