Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10471
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   115   4e-27
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   1.7  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   3.9  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   5.2  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   6.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   6.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   6.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   6.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   6.8  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  115 bits (276), Expect = 4e-27
 Identities = 49/85 (57%), Positives = 66/85 (77%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIR 180
           +L+++HY++   +PF+  LV +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIR
Sbjct: 45  DLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIR 104

Query: 181 GDL*IQVGRNIIHGSDSVESAKKEM 255
           GD  I +GRN+ HGSDS+ESA +E+
Sbjct: 105 GDYGIDLGRNVCHGSDSIESANREI 129


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 155 AGLVAPSILRPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 36
           +G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 85  VPMVWEGLNVVKTGRKMLGATNPAD 159
           +P  WE  NV+ +  KM G  +P D
Sbjct: 103 LPQTWEDPNVIDSRTKMKGDGDPLD 127


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 149 LVAPSILRPVFTTLRPSH 96
           LV PSIL P F ++R +H
Sbjct: 204 LVLPSILSPAFYSIRATH 221


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 AGYLQMKTGFMSKFILICIYCLVLMIYVKHSVIK 387
           A +L++ +  M  F L+C++   ++ + KH++ +
Sbjct: 37  ARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYR 70


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 AGYLQMKTGFMSKFILICIYCLVLMIYVKHSVIK 387
           A +L++ +  M  F L+C++   ++ + KH++ +
Sbjct: 37  ARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYR 70


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +1

Query: 85  VPMVWEGLNVVKTGRKMLGATNPADSQPGTIRGDL*IQVGRNI----IHGSDSVESAKKE 252
           +  V EG N +  GR++L  T+P           + + +G  I     H SD +   + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447

Query: 253 MASGLRTKKL 282
            A G    +L
Sbjct: 448 SAFGFSAMEL 457


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 AGYLQMKTGFMSKFILICIYCLVLMIYVKHSVIK 387
           A +L++ +  M  F L+C++   ++ + KH++ +
Sbjct: 37  ARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYR 70


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 AGYLQMKTGFMSKFILICIYCLVLMIYVKHSVIK 387
           A +L++ +  M  F L+C++   ++ + KH++ +
Sbjct: 37  ARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYR 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,518
Number of Sequences: 5004
Number of extensions: 38137
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)