Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10456
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   100   2e-22
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   100   2e-22
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.1  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.6  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   4.8  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   4.8  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  100 bits (239), Expect = 2e-22
 Identities = 46/89 (51%), Positives = 65/89 (73%)
 Frame = +3

Query: 258 TDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 437
           T+  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 438 YDAESKKFNAEVHRAHIFGLHVADT*EVL 524
           +D E+++ + E  R +I+G HVA+  E+L
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEML 211



 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = +1

Query: 1   VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 180
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 181 AAYSTG 198
           AAY+TG
Sbjct: 97  AAYATG 102



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
 Frame = +2

Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVK 682
           YM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS +K  K+      +
Sbjct: 207 YMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAE 266

Query: 683 QKRWNKRQLTLAERK 727
             ++ +R+LT  ERK
Sbjct: 267 SLKYTQRKLTAEERK 281


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  100 bits (239), Expect = 2e-22
 Identities = 46/89 (51%), Positives = 65/89 (73%)
 Frame = +3

Query: 258 TDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 437
           T+  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 438 YDAESKKFNAEVHRAHIFGLHVADT*EVL 524
           +D E+++ + E  R +I+G HVA+  E+L
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEML 211



 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = +1

Query: 1   VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 180
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 181 AAYSTG 198
           AAY+TG
Sbjct: 97  AAYATG 102



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +2

Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVK 682
           YM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS +K  K+      +
Sbjct: 207 YMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAE 266

Query: 683 QKRWNKRQLTLAERK 727
             +  +R+LT  ERK
Sbjct: 267 SLKHTQRKLTAEERK 281


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 527  QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
            +++++S  ++ +K ++  V        +KK +E IR+D       LK+D  K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 223 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 131
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 204  ISTKTASKTWT*HLIHWTTDVTGDEYNVEPVDNG 305
            +S+K   ++W  + I W     G   N +P DNG
Sbjct: 1366 VSSKYGKRSWARYPIFWGLRKIGKLPNPDPADNG 1399


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 635 ADPSHKKKELKKDSVKQKRWNKRQLTLAERKT 730
           +DP   +   KK SV +K W +RQ TL  +++
Sbjct: 76  SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 584 TADAIEAIYKKAHEAIRADPSHKKKELK 667
           TA  IEA+YKKA+  I+ D +H  K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,976
Number of Sequences: 5004
Number of extensions: 66296
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)