Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10451
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   103   7e-24
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.34 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   3.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   4.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   5.5  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   7.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   7.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   9.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  103 bits (247), Expect = 7e-24
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = +1

Query: 34  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
           +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F         +VLRLEC  CK ++Q+ L
Sbjct: 26  TQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVL 85

Query: 214 KRCKHFELGGDKKRR 258
           KRCKHFELGG+KK +
Sbjct: 86  KRCKHFELGGEKKTK 100


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  PWAACLSLDFLYCDTLCTLWHL 9
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 2   KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 178
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +2

Query: 77  EDVMIVNSRVTV-VSPNPSSKR---RQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVV 244
           +D+ ++  ++   VS N SS +   R   L K  S LS+P+ +     H        + +
Sbjct: 328 DDIKLIGCKIFAGVSLNFSSPKPAHRFYELNKTSSNLSIPVLQKPSNFHSSSTELSDNSI 387

Query: 245 TRREGTDDPILNASN 289
            +     DP++N +N
Sbjct: 388 HQGRRAVDPVVNQNN 402


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 38  STKSPRKGTLPRVEDVMIVNSRVTVVSPN 124
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  PRKGTLPRVEDVMIVNSRVTVVSPNPSS 133
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 215 FNATCDLTLQSAHSRRSTIFLVVFAFFL 132
           +N +C LTL     R   +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  SPRKGTLPRVEDVMIVNSRVTVVSPNP 127
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 229 SACISSMQPVISPCNRHTQD 170
           +A I +++PV+SP N+  +D
Sbjct: 691 NAVIKNLEPVLSPENKFAED 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,832
Number of Sequences: 5004
Number of extensions: 21114
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)