Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10450
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    30   0.34 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.60 
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    28   1.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.4  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.4  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    27   2.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    27   4.2  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   4.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   4.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   7.4  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   7.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   7.4  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   7.4  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   9.7  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   9.7  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 734 RYHLEQFLRALPMEHTVQNTERTEVPPQTQ 645
           RY LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 586  MESNGRSWYLGAPAQRWE--QYSTRGRTVLYKAEAFVQA*SXLRSVEDSQHFGRQLGFAF 413
            +++N R W+L   + RW+  +    G  V++ + AF    S +R   +S   G  L +A 
Sbjct: 1111 VDTNHRIWFLYFSSNRWQAIRVEAIGALVVF-SSAFFGVLSAVRGNPNSGLVGLSLSYAV 1169

Query: 412  QMTPKL 395
            Q+T  L
Sbjct: 1170 QITQSL 1175


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -3

Query: 584 GVKWKKLVFGSPGPEMGAVLHARPDCAL*SRSLCPGVKXPSLC*GLPAFWTPTWLCLPND 405
           G K  KL +G+ G  + A+  A  +C + S++    V   +L    PA W  TW  L + 
Sbjct: 312 GAKTIKLKYGNRGHNIPALDIASGNCHITSQNHGYAVDASTL----PAEWKATWTNLNDQ 367

Query: 404 SETGHRSKCRP 372
           S  G     RP
Sbjct: 368 SNEGIAHVSRP 378


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 73  IYRMKSVGESTEPCGTPALMV 11
           +YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 429 WRPKCWESSTERRXLHAWTKASAL*STVRPRVEYCSHLWAGAPKYQ 566
           W  KC + S     +HA TK     ST   +   C+H+     KY+
Sbjct: 270 WLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHMTCKKCKYE 315


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 379 HFERCPVSESFGRQSQVGVQNAGSPQQSEGY 471
           HF    +SE+FG   Q  +  +GS    EGY
Sbjct: 345 HFSPFSISENFGNSVQAKLYGSGSGDCPEGY 375


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 702 PHGTYGTKYRENRSPSADPEVPNDP*HWDYRQSERPSSVWSQMEEAG 562
           PH T     R       DPEV +D  HW ++  E+      Q+E  G
Sbjct: 61  PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKG 107


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 417 AKPSWRPKCWESS-TERRXLHAWT 485
           +K  W+PK W+SS  E + +H  T
Sbjct: 70  SKEGWQPKSWKSSRNENKSVHGMT 93


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 656 PQTQRFQTIRDIGIIDNPNGPPLYGVKWKKLVF 558
           P + R Q +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  GVPQGSVLSPTLFILYINDML 86
           G+PQGS+LS  L   Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 24  GVPQGSVLSPTLFILYINDM 83
           G PQGS++SP L  +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +3

Query: 9   MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 164
           +T+ + VP+ S      FI Y + +LSI  + C+        ++  ++++ +
Sbjct: 42  LTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 668 TEVPPQTQRFQTIRDIGIIDNPNGPPLYGVKW-KKLVFGSPGPEM 537
           + V PQT  F     + I+ NPN PP + V + K+ + GS  P++
Sbjct: 588 SSVLPQTVFFLE-DSVSILKNPNIPPQFAVNFMKEFLRGSYIPQL 631


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 581 LHTEEGRSDCR*SQCHGSFGTS 646
           L  + G SD +  QCHGSF T+
Sbjct: 251 LEKKTGLSDNKIIQCHGSFATA 272


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 33  QGSVLSPTLFILYINDMLSIDGMHCY 110
           + S L+ +L  LY+ D + ID  H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 492 KPLSRREVXFALLRTPSILDANLALPSK*LRNWTSLEMSTPSIPIL 355
           KP+    V F  L  P +   ++  P+    NWT L    P + +L
Sbjct: 466 KPIGFCSVSFVALMIPILCFPSVKNPTPAEMNWTCLVFGAPMLAVL 511


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 680 NTERTEVPPQTQR--FQTIRDIGIIDNPNGPPLYGVKWKKLVFGSPGPEMGAVLHARP 513
           N  R EV  + +R  +   +D     N   PPL    W+++V   P      +L+  P
Sbjct: 236 NASRREVTLKRKRDEYNAAKDSCFNTNTEPPPLDQTIWRQIVLDVPRTNPSILLYQNP 293


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 376 RHFERCPVSESFGRQSQ 426
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,031
Number of Sequences: 5004
Number of extensions: 93387
Number of successful extensions: 290
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)