Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10438
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    68   5e-13
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    62   3e-11
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    57   1e-09
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    42   5e-05
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    35   0.006
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    31   0.096
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    31   0.096
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   1.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   2.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   4.8  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   6.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    24   8.4  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    24   8.4  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 68.1 bits (159), Expect = 5e-13
 Identities = 28/62 (45%), Positives = 46/62 (74%)
 Frame = +3

Query: 15  DFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVHL 194
           +F++G + FDKD  G I   ELR++L++LGEKLS++E+++LL+G     G +NY +FV +
Sbjct: 78  EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFVQM 137

Query: 195 IM 200
           I+
Sbjct: 138 IL 139


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   DTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLL-QGQEDSQGNINYE 179
           D   +  E  + FDKDGNG+I+  EL H+L++LGE+LS +EV  ++ +   D  G INYE
Sbjct: 82  DNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYE 141

Query: 180 NFVHLI 197
            F  +I
Sbjct: 142 EFSRVI 147



 Score = 33.9 bits (74), Expect = 0.010
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 15  DFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLL-QGQEDSQGNINYENFVH 191
           +F E    FD+D +G I+S EL  ++ +LG+  +  E++ ++ +   D  G I++  F+ 
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLT 72

Query: 192 LI 197
           ++
Sbjct: 73  MM 74


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = +3

Query: 3   DTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQ-GQEDSQGNINYE 179
           ++  ++I+  R FDKD +G+I +A+    + TLGEKLSD+EV+ ++Q     + G+ +Y 
Sbjct: 75  ESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYY 134

Query: 180 NFVHLIM 200
           +FV  IM
Sbjct: 135 DFVQRIM 141


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 12  NDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVH 191
           ND +E    FD   +G I  + +R  LS++G+++   EVE +L+    S G   YE FV 
Sbjct: 117 NDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSY-TSHGVFYYEKFVD 175

Query: 192 LI 197
            I
Sbjct: 176 AI 177



 Score = 29.9 bits (64), Expect = 0.17
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 24  EGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQ 143
           E     DKDG+G I   +++ +L++L +  S+D +  + +
Sbjct: 52  EAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFE 91


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 33  RHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVHLIMQ 203
           RHF+K  +  ++  E    L++LG     +E   L     +S+  + YE F  ++M+
Sbjct: 494 RHFEKKKSNMLNEVEFYAALASLGLVYDTEEGTALFHRAANSEEGVTYERFTEIVME 550


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 30.7 bits (66), Expect = 0.096
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 15  DFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQG-QEDSQGNINYENFVH 191
           D  E  + FD D +  I   ELR  +  LG      EV ++L+   +  +G +  E+FV 
Sbjct: 38  DINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVR 97

Query: 192 LIMQ 203
           ++ +
Sbjct: 98  VMTE 101



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 12  NDFIEGLRHFDKDGNGFISSAE-LRHLLSTLGEKLSDDEVEQLLQ-GQEDSQGNINYEN 182
           ++ ++ LR FDK G G++   + +R +   + E+   +E+++  +   +D  G I+  N
Sbjct: 73  SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRN 131


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 30.7 bits (66), Expect = 0.096
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 39  FDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVHL 194
           FD    G+I   +LR   + LGE L+ +++ QL+     + G ++ E F  L
Sbjct: 21  FDVTHKGYIDFEDLRRSCAQLGENLTKEQL-QLMLDLAGTNGKVSREEFAEL 71


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 63  ISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVHLIMQG 206
           I  A++  LLSTL E   D ++EQ+ Q    +   + Y +F+  ++QG
Sbjct: 42  IVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRV-YHHFLRRLIQG 88


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 33  RHFDKDGNGFISS-AELRHLLSTLGEK-LSDDEVEQLL 140
           RH DK GN F ++  EL  +L  +G+K L++  +E +L
Sbjct: 670 RHIDKSGNEFTTAYLELLEVLLKVGQKYLAESLLEHIL 707


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 203 LHDEVNKVLIVDISLRVFLSLQELLYLIITELLSESREQVSQFRRRDEP 57
           +HD+V+K      S+ VF  L  LLY  + E L    +QVS  ++R  P
Sbjct: 735 MHDDVDKEQFGYSSMYVFFRLFNLLYERLYE-LQRLEDQVSIIQQRIIP 782


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 56  WVHLFCGTATPALY 97
           WVHL C + TP +Y
Sbjct: 927 WVHLICASWTPDVY 940


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 12  NDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVH 191
           N  +E L H  K+G+GF+  +  + +  +L        +E L   +  SQ +   +N VH
Sbjct: 19  NSDVETLSHIGKEGHGFLMKSLRKSVWVSLCGLSCRHRMECL--SRSTSQSSYADQNQVH 76

Query: 192 L 194
           L
Sbjct: 77  L 77


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 45  KDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGQEDSQGNINYENFVHL 194
           KDG      A L+ +   LG + SDDE   L +  E S+   N +   HL
Sbjct: 544 KDGRVGREEAWLKSMAQELGVESSDDEDPDLPKKSESSK---NKKQIAHL 590


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 63  ISSAELRHLLSTLGEKLSD 119
           +S  EL+ LLS + EK+SD
Sbjct: 228 LSRTELKRLLSKVNEKISD 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,896
Number of Sequences: 5004
Number of extensions: 25471
Number of successful extensions: 84
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)