Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10434X
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 0.64
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 1.1
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 1.5
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 25 2.6
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 2.6
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 5.9
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 5.9
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 24 5.9
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 23 7.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.9
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 23 7.9
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 23 7.9
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch... 23 7.9
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 0.64
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = -1
Query: 215 PVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAILNQYIFD 36
PV+T +D S S S+S+ +VLK S SV F GV + IFD
Sbjct: 409 PVSTEQSDPSVAASSSSSSQLDVVLKGSIPDTSSVRRNPPCFVNGVE-SINVDFEARIFD 467
Query: 35 EEGDR 21
GDR
Sbjct: 468 VSGDR 472
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 55 RMACSVSDTPSLKDL-PKVATDLKSQLEGFNTSCLR-DVDTNEKIVLPSAEDVATGR 219
++ CS+ TP+LKD P+ T + L+ F S + + V S+E GR
Sbjct: 165 KLKCSLQQTPTLKDTDPEAYTVGRVFLQDFEKSGVNLESSKRNSFVKKSSESATLGR 221
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 1.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 67 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATGRTKSP 231
S S+TPS K LP+ +T+ + +N + P AT ++K P
Sbjct: 589 SQSNTPSSKQLPQSVDGKTVTANANSTTVAKQPTSNVALTRPKPVRTATSQSKIP 643
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 1.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAED-VATGRTKSP*S 237
A S S TP +T + S +NTS + + L SA AT + +P S
Sbjct: 383 ATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLS 442
Query: 238 TVS 246
+V+
Sbjct: 443 SVN 445
Score = 24.6 bits (51), Expect = 3.4
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAED-VATGRTKSP*S 237
A S S TP +T + S +NTS + + L SA AT + +P +
Sbjct: 497 ATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLT 556
Query: 238 TVS 246
+V+
Sbjct: 557 SVN 559
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 2.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 88 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATGRTKSP*STVSRSLFEPA 267
+ D+PK++ + K + F T DT+ K++L S V +P S V S +PA
Sbjct: 355 VSDIPKLSIESKDLIHRFITFIDALYDTHGKLILSSEVPVQEIYPTAP-SEVLSSTADPA 413
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 212 VATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 84
V + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 87 VVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 5.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 67 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
SVS TP + P V +L + E F+T D D+ P+ E V+
Sbjct: 265 SVSSTPPVHPPPPVPQNLSAVNEEFDTK-KNDFDSKLPESTPAVEKVS 311
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 23.8 bits (49), Expect = 5.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 201 FSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGSVTH 70
FSRR + +G V G L LQ+C LGE + G VT+
Sbjct: 82 FSRRAFTIGVGGPV----GSGKTALLLQLCRLLGEKYSIGVVTN 121
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 249 SRYRRLRTLGPPSCDVFSRRKHNL 178
S+ R L +L +CDV + KH L
Sbjct: 722 SKLRELGSLSAAACDVTRKLKHRL 745
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 23.4 bits (48), Expect = 7.9
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 4 AECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 183
A+ L +SS +Y + + + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 184 VLPSAEDVAT 213
+LP+A+DV++
Sbjct: 784 ILPNADDVSS 793
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 23.4 bits (48), Expect = 7.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 206 TSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRS 93
TS A S I SLVS+S +Q +S S ATL S
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSS 109
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 5 LSARIFYPLPHQKYIDSEWPAP*VTLP 85
+SA F P+P+ Y D+ + A V P
Sbjct: 148 VSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.4 bits (48), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 23 YPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCF 190
YPL + + + P +++ P K SP+SP+ S P+ S+ + M ++ +
Sbjct: 306 YPL--SRSVSTPVPMSPISISPAKPSPQSPKL--SQSAVGHPSSSIPAAAMHKVSY 357
>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 208
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 55 RMACSVSDTPSLKDLPKVATDLKSQLEGFN 144
R+ V TP L++L A DL + FN
Sbjct: 115 RVYIQVEKTPGLEELQNAAYDLADTSDPFN 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,804
Number of Sequences: 5004
Number of extensions: 24660
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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