Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10430
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 681  FASVSSHRLASRPRTPVSPPPLFTTCASNMQDNSTTFSK 565
            + S+  H L SR  +P SPPP+ T   +N  D  T F K
Sbjct: 1723 YTSLEKHNLISR--SPSSPPPIHTNFDTN-ADIITLFEK 1758


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 WAHRGMFKLHSCLWTQKIH 214
           W HR MF LHS +   K+H
Sbjct: 164 WTHRAMFILHSMVILMKLH 182


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 639 TPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVI-ASSNKPLFTSAQQHSTQSP 481
           TPVS     T+ + + QD++T  S  S I+   +  +++ P+ TSA   S+  P
Sbjct: 277 TPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALP 330


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 693 KPRSFASVSSHRLASRPRTP--VSPPPLFTTCASNMQDNSTTFSKLS 559
           K  + AS++   L   P  P   SPPPL  T +    DN   F K S
Sbjct: 745 KVDTLASLAHDDLDDLPAVPRIFSPPPLPKTPSGEFGDNEFMFPKKS 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,819
Number of Sequences: 5004
Number of extensions: 54061
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)