Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10422
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 155 7e-39
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 155 7e-39
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.8
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.2
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 5.6
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 9.9
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 9.9
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.9
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 155 bits (375), Expect = 7e-39
Identities = 71/83 (85%), Positives = 76/83 (91%)
Frame = +2
Query: 257 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 436
FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57 FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116
Query: 437 DPSIGIYGLDFYVVLGRPGFNVA 505
DPSIGIYG+DFYVV+ RPG VA
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVA 139
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +3
Query: 96 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55
Score = 40.3 bits (90), Expect = 2e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 508 RRRKTGKVGFPHRLTKEDAMKWFQQKYD 591
R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 155 bits (375), Expect = 7e-39
Identities = 71/83 (85%), Positives = 76/83 (91%)
Frame = +2
Query: 257 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 436
FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57 FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116
Query: 437 DPSIGIYGLDFYVVLGRPGFNVA 505
DPSIGIYG+DFYVV+ RPG VA
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVA 139
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +3
Query: 96 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55
Score = 40.3 bits (90), Expect = 2e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 508 RRRKTGKVGFPHRLTKEDAMKWFQQKYD 591
R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 129 YEDSALHF*NYPSEPSSPFYLSST 58
YE+ + + +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 249 LYT*PWKIQAVVL*VAPTPWRHESA 175
+Y W I A +L V P PWR+ S+
Sbjct: 127 IYPLLWVITAFILIVFPFPWRYRSS 151
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -2
Query: 520 SYAFVCYVETWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVVT 365
SYA VC ++ WP + ++ N L+ ++ + A +T+G E+++
Sbjct: 20 SYASVCVMKKWPIIATNVIDEVSRNISKALEAGMS---DKAAYVTQGKEIIS 68
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 199 WSNSQDNSLYFPRLGIQCGFW 261
WS +D ++G QC FW
Sbjct: 282 WSKFEDGWYQISKIGAQCVFW 302
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.0 bits (52), Expect = 9.9
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = -1
Query: 578 WNHFIASSFVRRW 540
W+H+I++SF+ +W
Sbjct: 519 WSHYISASFLSKW 531
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 272 YDGY-QKPHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTDV 147
+DG Q P + + KY L C++++ T++ + G +V
Sbjct: 308 FDGIPQGPKGLEDVSKYPDLICKIIERTNATNEQIEGLMGLNV 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,821
Number of Sequences: 5004
Number of extensions: 53424
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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