Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10416
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    31   0.18 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.2  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.8  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   9.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.0  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLPVGENLQDHLFVPVFYTKPGDKK 746
           ++VV+AGAI  P LL +S I  +KH E  +   + +LPV   L         +T P  K+
Sbjct: 290 DIVVNAGAIALPILLKMSSIMKKKHTEWTS---QGELPVEIFLPSSYHFHSVFTCPVSKE 346

Query: 747 ATT 755
             T
Sbjct: 347 QAT 349


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -1

Query: 690  FLRQVNRL*LQCLGLPSACEVQFRRATTAVGS 595
            FL Q+ R   +CLG PS+ EV   RA TA+G+
Sbjct: 2324 FLPQLQRTFAKCLGDPSS-EVIRSRAATALGT 2354


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 652 RSSKCLRGPIPESNNSCGELIAPAETTTSFL 560
           + S+  R  I E NNS GE++   +T T++L
Sbjct: 259 KRSRVNRNRINELNNSLGEIVKQQDTLTTYL 289


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 72  LPPSTLPRGQAHPLFL*ARQAPS 4
           LPPS LPR   HPL L  +Q P+
Sbjct: 52  LPPSHLPRSTLHPL-LSQQQQPA 73


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 170 LPYFKKSESFMGKFDAEATKYHSKGGY 250
           +P +  S+ F  KFD E T + +K GY
Sbjct: 1   MPKYNVSD-FKSKFDKELTNHFNKNGY 26


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 630 PRKHLEDLNIEVKADLPVGENLQDHLFVPVFYTKPGDK 743
           P K++E L + +K    + E    +L +P F   P DK
Sbjct: 55  PEKYIEFLELRLKYLRGLAEESDPNLKLPSFLAPPNDK 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,968
Number of Sequences: 5004
Number of extensions: 67613
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)