BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30159 (729 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 87 2e-18 SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 8.4 SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 8.4 >SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosaccharomyces pombe|chr 3|||Manual Length = 244 Score = 87.0 bits (206), Expect = 2e-18 Identities = 48/105 (45%), Positives = 68/105 (64%) Frame = +2 Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*N 415 F EL + +PV+H ++GG RIIGR+T G R L P + N L+ + + Sbjct: 34 FYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGL---LVPSSTTDNELQHLRN---S 87 Query: 416 F*NPQIKTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEILA 550 +P +K R V+ERLSALGN++ACNDYVAL HPD++++TEEI+A Sbjct: 88 LPDP-VKIQR-VDERLSALGNIVACNDYVALVHPDIERETEEIIA 130 Score = 71.7 bits (168), Expect = 1e-13 Identities = 31/39 (79%), Positives = 36/39 (92%) Frame = +3 Query: 138 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 254 MA+R QFEN+NE+GVFS LTN+Y LVA+GGSENFYSVFE Sbjct: 1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFE 39 >SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme |Schizosaccharomyces pombe|chr 2|||Manual Length = 1012 Score = 25.4 bits (53), Expect = 8.4 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%) Frame = +3 Query: 66 NPREESHHIVKYIIREK-VKRKTKIMAVRVQFE---NNN 170 NPRE +I Y++ EK + + IM R+QF+ NNN Sbjct: 643 NPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNN 681 >SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1185 Score = 25.4 bits (53), Expect = 8.4 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 660 YQAPSVGCSTQWGRTKQ 610 +QA S+G TQW TK+ Sbjct: 880 FQATSLGLGTQWAETKK 896 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,195,037 Number of Sequences: 5004 Number of extensions: 68267 Number of successful extensions: 147 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 141 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 343230174 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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