BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30156 (775 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 27 3.9 SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 3.9 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.9 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 6.9 SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.9 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 9.1 SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 25 9.1 SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 9.1 >SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccharomyces pombe|chr 2|||Manual Length = 464 Score = 26.6 bits (56), Expect = 3.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 350 FSEVEHHSFFLFGEQNICH 406 F V+HHS+F FG + +CH Sbjct: 243 FYVVDHHSYFCFGGE-LCH 260 >SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1932 Score = 26.6 bits (56), Expect = 3.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 621 KFSACPQLGTMGERNTLTYWLWEN 550 K S CP+LGT G TY + EN Sbjct: 656 KLSLCPRLGTCGRFQLRTYVVDEN 679 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 26.6 bits (56), Expect = 3.9 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 383 IKKKNDVLLLRIYNFKNMLNHQNSDPANIYIQTNESLS 270 I K ++ LR+YN + NSD + +++NES++ Sbjct: 1160 IVKSFELFALRLYNALSKNYEMNSDIKDCIVESNESMN 1197 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter Bfr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1530 Score = 25.8 bits (54), Expect = 6.9 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = -2 Query: 699 FTPLMVEIEGGKQFCSIAFLKKYRPVKF-SACPQLGTMGERNTLTYWLWENFKNRFGKIC 523 F+ ++VEI F ++ FL + P+KF G L Y ++ + + FG+ Sbjct: 1298 FSAIIVEIPFNLVFGTLFFLCWFYPIKFYKHIHHPGDKTGYAWLLYMFFQMYFSTFGQAV 1357 Query: 522 YSIKFTITKINVHLAVLSNFILTTGGFFFKN 430 S +V ++L F++T G N Sbjct: 1358 ASACPNAQTASVVNSLLFTFVITFNGVLQPN 1388 >SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1075 Score = 25.8 bits (54), Expect = 6.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +3 Query: 204 NVKEAK*IVSKYHVLQSWISKYAQGFICLNVNISR 308 NVK V YH ++ Y QG I N+ +SR Sbjct: 263 NVKNVLTDVETYHEFLKLLNLYVQGIIDRNILVSR 297 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 25.4 bits (53), Expect = 9.1 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -2 Query: 654 SIAFLKKYRPVKFSACPQLGTMGERNTLTYWLWENFKNRFGKI 526 SI + Y+ K L ++ +RNT+ WL F +FG I Sbjct: 228 SIFYRSSYKKFKQDLYFNLHSICDRNTVHMWLQWIFPRQFGLI 270 >SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharomyces pombe|chr 3|||Manual Length = 635 Score = 25.4 bits (53), Expect = 9.1 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 368 DVLLLRIYNFKNMLNHQ-NSDPANIYIQTNESLSIFTYP*LQNMI 237 D L+ IY+ N+L H+ NSD A+I + + + Y LQN + Sbjct: 85 DALVYPIYSHHNILEHENNSDYASITPSNHPAFTSCAY--LQNPV 127 >SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 638 Score = 25.4 bits (53), Expect = 9.1 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 603 QLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSN--FILTTGG 445 Q+G + NTL+ R K+C + FT T+ +++ A +SN ++T+ G Sbjct: 455 QVGFVASSNTLSNGRVYYLDTRMYKVC--LNFTTTQKDINHATISNSGILVTSSG 507 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,195,487 Number of Sequences: 5004 Number of extensions: 68118 Number of successful extensions: 145 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 373338084 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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