Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30131
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.40 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.6  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 334 LLSYLIYLCNFPVFFLIVYFIQ*KMFVYILYLVN 435
           LL Y  + C++ VF+  V++I   +F+ + YLVN
Sbjct: 179 LLGY--FQCSYSVFYASVFYILLGVFIRVFYLVN 210


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 84  FYMRLVFSYIFFIYPFFEYVYY-RI*ATKFCYLCYI 188
           F+   V+ +  F+YP+  YVY  ++ + +  YL YI
Sbjct: 24  FFHLYVWPFALFVYPYIGYVYQNKLYSEEVRYLTYI 59


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +1

Query: 10  YCRILLSHKTQYANVYVDPLDAKDYFI*D*FLAIFSLFTPFLSTYIIEFKQRNFVICVIL 189
           +C++ + +  ++ +  +D   A D FI   +L+   L  P  STY       +  +CVIL
Sbjct: 350 FCKLFIHYNERFFHYLIDTDRAIDLFIFLLYLSFEYLGDP--STY------NHLKLCVIL 401

Query: 190 LKKNRNENFANKR 228
           LK+   E +  KR
Sbjct: 402 LKRLTAEKYFCKR 414


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 13   CRILLSHKTQYANVYVD-PLDAKDYFI*D*FLAIFSLFTPFLSTYIIEF 156
            C+ + S   Q+ ++Y+  P   KDY   D F+A   + +  +S  ++EF
Sbjct: 972  CKFVHSFLDQHESMYLKYPDPVKDYACMDVFIAKLKMLSELVSAALLEF 1020


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 25 LSHKTQYANVYVDPLDAK 78
          LSH++ Y+N YVD L  K
Sbjct: 4  LSHESGYSNAYVDELKRK 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,867
Number of Sequences: 5004
Number of extensions: 39275
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)