Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   7.2  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    26   7.2  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 447 SSHRAHTPPTLHPQLRRTPRL 509
           SS R HTP T   + ++TPRL
Sbjct: 95  SSERRHTPQTNSQKSQKTPRL 115


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 591 EDTAELMVLENNRRCSVSYSGSDRLSNEGAEY--VATAGVAWAEYARD 454
           + T+ ++++E   R   SY+  DR+   G ++  ++T    W   +RD
Sbjct: 118 DPTSGIIMMEERTRSETSYANQDRMCYWGYKFEAISTLPEIWDACSRD 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,436
Number of Sequences: 5004
Number of extensions: 47638
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)