Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30088
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    33   0.025
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    27   1.7  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.8  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   5.1  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.1  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   6.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   6.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.8  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +3

Query: 105 KNRIQRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKT 245
           + R+Q   D G+D   I  Q+ VL+++L  +PD   RL  A  DL++
Sbjct: 33  EKRVQSKIDNGEDSAEIEHQKFVLKKHLEALPDALVRLRNATNDLES 79


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 197 SRLSKEINQSI-YRSQNYFRTEQDLKEHEEYI 289
           S+LSK+  +S+ YRS+ + +  Q L+EHE+ +
Sbjct: 3   SKLSKKKLKSLEYRSKKFDKKSQSLEEHEKKV 34


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 114 IQRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLEQN 260
           ++ + DEGQ+   +RK    +Q++    P  Q R  +  +  K T + N
Sbjct: 12  LREVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAEYNSPAKATGDVN 60


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +2

Query: 197 SRLSKEINQSIYRSQNYFRTEQDLKEHEEYITAEQVLKDA 316
           +++ KE++ S  R +  F+T Q+L+E  ++ ++    KD+
Sbjct: 17  NKMQKELDLSFERYERLFKTTQELQEKVKFSSSRFYNKDS 56


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 450 PPPPPTSTQKSFITTNVHPDT 512
           PPPPP    K+ + T  HPD+
Sbjct: 907 PPPPPPLPVKTSLNTFSHPDS 927


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 173 SSGVPDDGSRLSKEINQSIYRSQNYFRTEQDLKEHEEYITAEQVLKDAEPQLPAIES 343
           S  V  DG+R S    + +YR  +Y  TE D  EHE  I  ++  K A  Q  ++ S
Sbjct: 93  SDDVRVDGTRRSSRAKRPVYRDFSY--TEID--EHEIPIPKKRKSKPAPKQKKSVAS 145


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 242 NYFRTEQDLKEHEEYITAEQVLKDA-EPQLPAIES*LSPFY 361
           N+F    DLK  EEY T+  VL    + QL  I + +  +Y
Sbjct: 103 NFFSLSNDLKRLEEYNTSCSVLLSLYQRQLKKISTTIESYY 143


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 449 PSTTANLNTKVVHHDKCAPRYKQAQVSPPARTYHRRATEDQDSSSKFIMATSVTS 613
           PST    +   VHHD  AP     + S  +       ++D  SS   + A S+ +
Sbjct: 400 PSTLLPQDGNAVHHDTDAPSLSNVRKSVDSPRVPPSFSDDAVSSFSLVTAPSINN 454


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 102 QKNRIQRIK-DEGQDEHNIRKQEEVLQEYLMMVPD 203
           QK+  +R K D+G +E N  +QE++L   L  + D
Sbjct: 74  QKHATERQKLDKGDEETNETQQEDLLNTLLQQMED 108


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 459 PPTSTQKSFITTNVHPDTSKHKFRHQQ 539
           PP+  ++S  T+  +PDT+  + R Q+
Sbjct: 376 PPSFDERSCFTSKQNPDTTSDRCRQQE 402


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 147 HNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTRNT-----LPLNRFSR 311
           ++I K +E     L  V DC RRL+ +  +  ++L ++   +    T     +PL  F  
Sbjct: 157 YDIEKLDEKTVLVLEDVEDCDRRLLSSLVEALSSLVRHSKLQGCLYTIFNLKIPLEMFDT 216

Query: 312 TLNPSF 329
           +L+  F
Sbjct: 217 SLDSKF 222


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +3

Query: 102 QKNRIQRIKDEGQDEHNIRKQEEVLQEYLMMV-PDCQ-----RRLIKAYTDLKTTLEQNR 263
           Q+N + RI +  Q    IR    +L++YL  + PD Q     + +      +KT  + + 
Sbjct: 119 QRNTVARILNSKQLSDAIRNINSILEKYLRFLNPDLQELSDKKAVSSTQKPIKTIGKVDL 178

Query: 264 TSKNTRN 284
           ++K+T N
Sbjct: 179 SNKSTSN 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,127
Number of Sequences: 5004
Number of extensions: 45745
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)