Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30087
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 273 2e-74
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 272 4e-74
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 272 5e-74
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 30 0.46
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 27 2.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 3.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 5.6
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 26 5.6
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 7.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 9.8
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 25 9.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 273 bits (670), Expect = 2e-74
Identities = 124/169 (73%), Positives = 141/169 (83%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QRLIKVDGKVRT+ T+PTGFM +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 67 QRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF 507
KRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF
Sbjct: 127 KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
Score = 58.0 bits (134), Expect = 2e-09
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 620
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 632 FATRLNNVFINRQGHEGRT-SSLPRGQRASAFTIRRRKR 745
FATRL+NVF+ G G++ SLP+G+ R R
Sbjct: 218 FATRLSNVFV--IGETGKSWISLPKGKGVKLSITEERDR 254
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 272 bits (667), Expect = 4e-74
Identities = 123/169 (72%), Positives = 141/169 (83%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QRLIKVDGKVRT+ T+PTGFM ++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 67 QRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF 507
KRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF
Sbjct: 127 KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
Score = 58.0 bits (134), Expect = 2e-09
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 620
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 632 FATRLNNVFINRQGHEGRT-SSLPRGQRASAFTIRRRKR 745
FATRL+NVF+ G G++ SLP+G+ R R
Sbjct: 218 FATRLSNVFV--IGETGKSWISLPKGKGVKLSITEERDR 254
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 272 bits (666), Expect = 5e-74
Identities = 123/169 (72%), Positives = 141/169 (83%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QRLI+VDGKVRT+ T+PTGFM +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 67 QRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF 507
KRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF
Sbjct: 127 KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKF 175
Score = 58.0 bits (134), Expect = 2e-09
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 620
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDA 213
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 632 FATRLNNVFINRQGHEGRT-SSLPRGQRASAFTIRRRKR 745
FATRL+NVF+ G G++ SLP+G+ R R
Sbjct: 218 FATRLSNVFV--IGEAGKSWISLPKGKGVKLSITEERDR 254
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.9 bits (64), Expect = 0.46
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +1
Query: 178 KQRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 357
K++ K+ +R E +P C I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 358 VK-RVATGPKNVPYLVTHDGR 417
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = -1
Query: 736 SANGEGGSPLPARQRRCTPFVPLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVP 557
S+ G SPLP+ CT +P + P P S T + P + T
Sbjct: 323 SSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382
Query: 556 TRPKL 542
+ P L
Sbjct: 383 SSPLL 387
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 340 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGL 513
K+ C V+R TG +L+ HD Y ++ + I DI++TK+ FI+ G+
Sbjct: 271 KFGCCIVER--TGSDVWAFLLAHD-IMFAYRGNILVIKQLIYNDISSTKVRLFIRRGM 325
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 237 SSRISRFSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 82
SS+ P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 444 QSQRFHPVRHRNYED 488
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 411 WPHHPLPRPTYQSQR 455
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 608 HQGLHGTHFATRLNNV 655
H+GL GTH T LNNV
Sbjct: 86 HRGLAGTHDVTFLNNV 101
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 775 RTFGRECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEHVVQ 644
+TFG+EC +S P G L +P P P+ +Q
Sbjct: 244 QTFGKECPISTAPPVLNIGDRSLETPPPIPSPRPPQPVAVEAIQ 287
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 414 PHHPLPRPTYQSQRFHPVRHRNYEDY 491
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 115 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTEPTYP 231
++ + N+L Y TGNE+ +Q ++ V + + EP+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 339 SLLRGDTVDCESALNIID*TKQ 274
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,958
Number of Sequences: 5004
Number of extensions: 82242
Number of successful extensions: 236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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