Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    29   1.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   4.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   7.8  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 212 SVSRWTQYSGHTR-SPQARAAHISALQQASKNNPNPNDDGSY 334
           +VS   + S H+R SPQ   A+ S+   +S +N  P+ +G Y
Sbjct: 256 TVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKY 297


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 198  PANIALSQDGRNILDTPEVHR---LVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTGN 368
            P+ + L + G  +L     H    +V    P   +  +  PT+ +T  TTLDG++ +T  
Sbjct: 1182 PSAVHLVRRGEYLLSVVREHPDLFVVKTDQPTKRKYNRKAPTKSSTRQTTLDGSISNTKK 1241

Query: 369  KLR 377
              R
Sbjct: 1242 SSR 1244


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 615 PSFTKGLGLPRPPRTGKLPGSPGTWNASGSTN-*LEPEASLPGQF 746
           P +     +P  P     PG+PG++N S S+N    P  S+P  +
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGY 584


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 732 GRPPVPINWLNRKHSKFLV 676
           GRPP+P  +L  +H +F +
Sbjct: 164 GRPPIPPEFLKSRHKEFTI 182


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 233 YSGHTRSPQARAAHISALQQASKNNPNPND 322
           +S       +  +HIS+    S  NPNPND
Sbjct: 56  HSASVHPSTSSTSHISSPSAFSVQNPNPND 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,390
Number of Sequences: 5004
Number of extensions: 68686
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)